View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_high_27 (Length: 240)
Name: NF11238_high_27
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 50149406 - 50149632
Alignment:
| Q |
1 |
cttcgtctcacattgcttaggaatcgaggctaattataaacactaacactcaccgtgagagcttacacgagacccaaaccgaacaagtgtacttaaggtc |
100 |
Q |
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| T |
50149406 |
cttcgtctcacattgcttaggaatcgaggctaattataaacactaacactcaccgtgagagcttacacgagacccaaaccgaacaagtgtacttaaggtc |
50149505 |
T |
|
| Q |
101 |
agaacaaaaccctaaaaatataaattcaaatagaggg--tacctgatatcaacacctccagaagagacatgagcagaaacattcttggaaacccattttt |
198 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50149506 |
agaacaaaaccctaaaaatataaattcaaatagagggtatacctgatatcaacacctccagaagagacatgagcagaaacattcttggaaacccattttt |
50149605 |
T |
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| Q |
199 |
cagcagctggaagactattagcaagtg |
225 |
Q |
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||||||||||||||||||||||||||| |
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| T |
50149606 |
cagcagctggaagactattagcaagtg |
50149632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 139 - 220
Target Start/End: Complemental strand, 1751959 - 1751878
Alignment:
| Q |
139 |
acctgatatcaacacctccagaagagacatgagcagaaacattcttggaaacccatttttcagcagctggaagactattagc |
220 |
Q |
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|||||||||| ||||| ||||| || |||||||| ||||||||||| | ||||||||||||||||||| || |||||||||| |
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| T |
1751959 |
acctgatatctacaccaccagatgaaacatgagctgaaacattcttagcaacccatttttcagcagcttgacgactattagc |
1751878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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