View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11238_high_29 (Length: 234)
Name: NF11238_high_29
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_high_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4872223 - 4872442
Alignment:
| Q |
1 |
tgtcacgctaaaaacggtcacatctcttcagctttctctcttttccgcaaaatcatcaacgctggtcttcgtcccagttcttccaatatgtatgatcttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
4872223 |
tgtcacgctaaaaacggtcacatctcttcagctttctctcttttccgcaaaatcatcaacgctggtcatcgtcccagttcttccgatatgtatgatcttt |
4872322 |
T |
|
| Q |
101 |
tctgttgtcttttagccccaggccacatttacaaagcaatgctcttacacaattacatcttcctaaagggtggttttcggttgagctgtaaacttatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4872323 |
tctgttgtcttttagccccaggccacatttacaaagcaatgctcttacacaattacatcttcctaaagggtggttttcggttgagctgtaaacttatcat |
4872422 |
T |
|
| Q |
201 |
catctagtcggtagcttatg |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4872423 |
catctagtcggtagcttatg |
4872442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University