View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11238_high_3 (Length: 688)
Name: NF11238_high_3
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 240 - 670
Target Start/End: Complemental strand, 7296349 - 7295924
Alignment:
| Q |
240 |
gttagtgtacacattacacaacatatcttttaaatgatagtgcacattacacagcataaatttatatctaaagagaaataaagctaaaagaagcaagaat |
339 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7296349 |
gttagtgtacacattactcaacatatcttttaaatgatagtgcacattacacaacataaatttatatctagagagaaataaagctaaaagaagcaagaat |
7296250 |
T |
|
| Q |
340 |
ggacgtggggaagatagtgcacatgaatggaggcgatgggaaaacaagttatgcaaacaactcatttttccaggtacatacatatatacacacacagatt |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7296249 |
ggacgtggggaagatagtgcacatgaatggaggcgatgggaaaacaagttatgcaaacaactcatttttccaggtacatacatatatacacacacagatt |
7296150 |
T |
|
| Q |
440 |
agatcggttgactctacaattagacnnnnnnnnatcactctatatgattagacttactctaagttttaactcttaattatattactaattatttaacact |
539 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
7296149 |
agatcggttgactctacaattagacttttttttatcactctatatgattagacttactctaagttttacctcttaattatattactaattatttaacatt |
7296050 |
T |
|
| Q |
540 |
tccctttcttttattaatctaaatagatcgggtattgatgttatcaccaagcttgggttttctggtgactatagtcatggtggtgattttagcattgaga |
639 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7296049 |
tccctctcttttattaatctaaatagatcgggtattgatgttatcaccaagcttgggttttctggtgactatagtcatggtggtgattttagcattgaga |
7295950 |
T |
|
| Q |
640 |
tgatattgattatattatagcatttgcataa |
670 |
Q |
| |
|
||||||| ||||||||||||||||||| |
|
|
| T |
7295949 |
tgatatt-----tattatagcatttgcataa |
7295924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 318 - 406
Target Start/End: Complemental strand, 7298586 - 7298498
Alignment:
| Q |
318 |
taaagctaaaagaagcaagaatggacgtggggaagatagtgcacatgaatggaggcgatgggaaaacaagttatgcaaacaactcattt |
406 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||| || ||||||||||||||||||| ||||| ||||||| |||||||| ||||||||| |
|
|
| T |
7298586 |
taaagctaatagaaacaagaatggacctggggcaggtagtgcacatgaatggaggtgatggagaaacaagctatgcaaaaaactcattt |
7298498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 31398515 - 31398574
Alignment:
| Q |
172 |
gccaaatcagaggtggtaggaggggtgtacacttataagtgtgttcaccgatctttttcc |
231 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
31398515 |
gccaaataagaggtggtaggaggggtgtacacttattagtgtgttcaccaatctttttcc |
31398574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 172 - 231
Target Start/End: Original strand, 22243166 - 22243225
Alignment:
| Q |
172 |
gccaaatcagaggtggtaggaggggtgtacacttataagtgtgttcaccgatctttttcc |
231 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
22243166 |
gccaaataagaggtggtaggaggggtgtacacttattagtgtgttcaccaatctttttcc |
22243225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 14055127 - 14055076
Alignment:
| Q |
172 |
gccaaatcagaggtggtaggaggggtgtacacttataagtgtgttcaccgatct |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
14055127 |
gccaaatcagaggtggtaggaggggtgt--acttataagtgtgttcaccaatct |
14055076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 24709122 - 24709170
Alignment:
| Q |
184 |
gtggtaggag-gggtgtacacttataagtgtgttcaccgatctttttcc |
231 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||| |||| |||||||||| |
|
|
| T |
24709122 |
gtggtaggagagggtgtacacttaaaagtgtgtccaccaatctttttcc |
24709170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University