View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_high_33 (Length: 208)
Name: NF11238_high_33
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 34325421 - 34325592
Alignment:
| Q |
19 |
gaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcacca |
118 |
Q |
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| T |
34325421 |
gaggaatggtgatatatttttcgaaaaaaaagatgaaaaaatagtctgctatgatttaagtacacacatggttgaggaactcggtcttgaagaagcacca |
34325520 |
T |
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| Q |
119 |
tcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctc |
190 |
Q |
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| T |
34325521 |
tcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctc |
34325592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 29352399 - 29352226
Alignment:
| Q |
19 |
gaggaatggtgatatatt-tttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgagga---actcggtcttgaagaagc |
114 |
Q |
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|||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
29352399 |
gaggaatggtgatatattctttcaaaaaa-aagataaaaaaatagtctgctatgatttaagtacacgcatggttgaggaggaacttggtcttgaagaagc |
29352301 |
T |
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| Q |
115 |
accatcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttct |
189 |
Q |
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|||||||||||||||||||||||||||| ||||||||| |||||||| | | ||||||||||||||||||||| |
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| T |
29352300 |
accatcaaatagaataatttacaagaaagagtggtttgacaaatccaataacagattagttggttttcttgttct |
29352226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 4028006 - 4028185
Alignment:
| Q |
11 |
ggagcagagaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaag |
110 |
Q |
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||||||| |||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
4028006 |
ggagcagggaggaatggtgatatattcttcaaaaaaaaaggtaaaaaaatagtctgctatgatttaagcacacacatggttgaggaactcggtcttgaag |
4028105 |
T |
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| Q |
111 |
aagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctc |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
4028106 |
aagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaattccagtaaatcattagttggttttcttgttctc |
4028185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 30249919 - 30250051
Alignment:
| Q |
22 |
gaatggtgatatatttttc-aaaaaagaa--gatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcacca |
118 |
Q |
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||||||||||||||| ||| |||||| || |||| |||| |||||||||||||||||||||||| |||| |||||||| || ||||||||||| ||||| |
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| T |
30249919 |
gaatggtgatatattcttcgaaaaaataaacgatggaaaattagtctgctatgatttaagtacacacatgtttgaggaaatcagtcttgaagaaccacca |
30250018 |
T |
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| Q |
119 |
tcaaatagaataatttacaagaaaaagtggttt |
151 |
Q |
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||||||||||||| ||||||||||||||||||| |
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| T |
30250019 |
tcaaatagaataacttacaagaaaaagtggttt |
30250051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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