View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_high_7 (Length: 450)
Name: NF11238_high_7
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 23 - 435
Target Start/End: Complemental strand, 8832248 - 8831835
Alignment:
| Q |
23 |
gcgcctgtttggtatagtggtagaaactgtctacgtgtgttttggttctctc-aaatgcgattttaacatgttttgtttccaattctgctttcgccgtaa |
121 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
8832248 |
gcgcctgtttggtatagtggtagaaactgtctatgtgtgttttggttctctccaaatgcgagtttaacatgttttgtttccaattatgctttcgtcgtaa |
8832149 |
T |
|
| Q |
122 |
acgtgaattttagccaaaaccgcgtgtctggtaaatgctaacattcctaaagagagatcaaatatatcagtataatatattataagaatattacaccacc |
221 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8832148 |
acgtgaattttagccaaaaccgcgtgtctggtataagctaacattcctaaagagagatcaaatatatcagtataatatattataagaatattaaaccacc |
8832049 |
T |
|
| Q |
222 |
caaccgttagattgaaagtttatatacatttctttaaggagttgaaagtttatatgttttctataatttatacgtaagtgtattgttttagactgtacta |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8832048 |
caaccgttagattgaaagtttatatacatttctttaaggagttgaaagtttatatgttttctataatttatatgtaagtgtattgttttagactgtacta |
8831949 |
T |
|
| Q |
322 |
aaaccttaaattccactcatacagcacctaaagtccaaacacataacccaatacctatgatccggaagtttaggatccatgcaggtcaggtccgtaactc |
421 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
8831948 |
aaaccttaaattccactcatacagcacccaaagtccaaacacataacccaatacctatgatccggaagcttaggatccatgcaggtcaggtccgtaacgc |
8831849 |
T |
|
| Q |
422 |
ttttcaacgtttat |
435 |
Q |
| |
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|||||||||||||| |
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| T |
8831848 |
ttttcaacgtttat |
8831835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 344
Target Start/End: Original strand, 6968000 - 6968128
Alignment:
| Q |
227 |
gttagattgaaagtttatataca-tttctttaaggagttgaaagtttata---------tgttttctat-aatttatacgtaagtgtattgttttagact |
315 |
Q |
| |
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||||||| ||||||||||||||| ||| |||||||| ||||||||||||| | ||||||| |||||||| ||| ||||||| ||||||||| |
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| T |
6968000 |
gttagatcgaaagtttatatacattttttttaaggaattgaaagtttatattatacagctcatttctataaatttatatgtatgtgtattattttagact |
6968099 |
T |
|
| Q |
316 |
gtactaaaaccttaaattccactcataca |
344 |
Q |
| |
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| ||||||||| ||||||| ||||||||| |
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| T |
6968100 |
ggactaaaaccctaaattcaactcataca |
6968128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 425
Target Start/End: Original strand, 6968219 - 6968281
Alignment:
| Q |
366 |
aacccaatacct---atgatccggaagtttaggatccatgcaggtcaggtccgtaactctttt |
425 |
Q |
| |
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| T |
6968219 |
aacccaataccttcaatgatcaggaagcttaggatccatgtaggtcaggtccgtaacgctttt |
6968281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Original strand, 27020544 - 27020605
Alignment:
| Q |
84 |
tttaacatgttttgtttccaattctgctttcgccgtaaacgtgaattttagccaaaaccgcg |
145 |
Q |
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|||||| ||||| |||||| |||||||||||||||||| ||||| |||| | ||||| |||| |
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| T |
27020544 |
tttaacgtgtttggtttccgattctgctttcgccgtaatcgtgagttttggtcaaaatcgcg |
27020605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 46540955 - 46541102
Alignment:
| Q |
23 |
gcgcctgtttggtatagtggtagaaactgtctacgtgtgttttggttctctcaaatgcgattttaacatgttttgtttccaattctgctttcgccgtaaa |
122 |
Q |
| |
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||||||||||||||| | ||||||||| || ||||| |||| |||||||||| | || |||| ||||||| ||||||||||||||||||||||||| |
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| T |
46540955 |
gcgcctgtttggtatcggggtagaaacaatcaacgtgcattttccttctctcaaacgtgagtttagcatgtttggtttccaattctgctttcgccgtaac |
46541054 |
T |
|
| Q |
123 |
cgtgaattttagccaaaaccgcgtgtctggtaaatgctaacattccta |
170 |
Q |
| |
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||||| ||| ||||||||||||| |||| | ||| ||||||||||||| |
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| T |
46541055 |
cgtgagtttcagccaaaaccgcgcgtctagcaaaagctaacattccta |
46541102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 24 - 170
Target Start/End: Complemental strand, 387257 - 387111
Alignment:
| Q |
24 |
cgcctgtttggtatagtggtagaaactgtctacgtgtgttttggttctctcaaatgcgattttaacatgttttgtttccaattctgctttcgccgtaaac |
123 |
Q |
| |
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|||||||||||||| | ||||||||| ||| ||||| || || |||||||||| | || |||| ||||||| |||||||||||| |||| ||||||| | |
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| T |
387257 |
cgcctgtttggtatcgcggtagaaacagtcaacgtgcgtcttccttctctcaaacgtgagtttagcatgtttggtttccaattcttcttttgccgtaacc |
387158 |
T |
|
| Q |
124 |
gtgaattttagccaaaaccgcgtgtctggtaaatgctaacattccta |
170 |
Q |
| |
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|||| ||| ||||||||||||| |||| | ||| ||||||||||||| |
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|
| T |
387157 |
gtgagtttcagccaaaaccgcgcgtctagcaaaagctaacattccta |
387111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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