View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11238_low_10 (Length: 365)
Name: NF11238_low_10
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 249
Target Start/End: Original strand, 6969050 - 6969285
Alignment:
| Q |
14 |
agaagcagagatgaaggctgagaaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaaggctgaaaattcctaggcaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969050 |
agaagcagagatgaaggctgagaaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaaggctgaaaattcctaggcaat |
6969149 |
T |
|
| Q |
114 |
attgctagttattttatattagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttactttattataagttaga |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6969150 |
attgctagttattttatattagagtcttattaaaacattagtatgaatctctatttctatgcttacattcgagtcttaatttactttattataagttaga |
6969249 |
T |
|
| Q |
214 |
ttaatatgctaaggttgaaacattgttggtgattat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
6969250 |
ttaatatgctaaggttgaaacattgttggtgattat |
6969285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 103 - 225
Target Start/End: Complemental strand, 1000088 - 999959
Alignment:
| Q |
103 |
tcctaggcaatattgctagttattttatatt--agagtcttattaaaa------cattactatgaatctctatttctatgcttacattagagtcttaatt |
194 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || |||||||||||| ||||| ||| | | |||||||||||||||||||||| ||||| ||| |
|
|
| T |
1000088 |
tcctaggcaatattgctggttattttatattttagggtcttattaaaattaaaacattagtat-agtatctatttctatgcttacattagtgtcttgatt |
999990 |
T |
|
| Q |
195 |
tactttattataagttagattaatatgctaa |
225 |
Q |
| |
|
||| ||| |||||||||||||||| |||||| |
|
|
| T |
999989 |
tacattaatataagttagattaatgtgctaa |
999959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 2178425 - 2178513
Alignment:
| Q |
131 |
attagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttactttattataagttagattaatat |
220 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||| |||||||||||| | ||||| |||| ||||||| |||||||||||||| |
|
|
| T |
2178425 |
attagagtcgtattaaaacattagtatgaatatctatttccatgcttacattacattcttattttagattattat-agttagattaatat |
2178513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 1000209 - 1000130
Alignment:
| Q |
14 |
agaagcagagatgaaggctgagaaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagatgcagaag |
93 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||| ||||||||| |||| |||| ||||||||||||||||||||| |
|
|
| T |
1000209 |
agaagcagagatgaaggttgagaaagaaaaggggactagtgaagaggattcactagaggaggaggcagaagatgcagaag |
1000130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 51315915 - 51315840
Alignment:
| Q |
122 |
ttattttatattagagtcttattaaaacattactatgaatctctatttctatgcttacattagagtcttaatttac |
197 |
Q |
| |
|
||||||| ||||||||||||| ||||| ||| ||||||| |||||||| ||| ||||| |||||||||| ||||| |
|
|
| T |
51315915 |
ttattttgcattagagtcttatgaaaacgttaatatgaatatctatttccatgtttacaatagagtcttattttac |
51315840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 51316032 - 51315982
Alignment:
| Q |
36 |
aaagaagaagggacaggtgaagagggttcatcagagaaggaggcagaagat |
86 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
51316032 |
aaagaagaagggactagtggagaggattcatcagagaaggaggcagaagat |
51315982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University