View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_low_11 (Length: 351)
Name: NF11238_low_11
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 23 - 333
Target Start/End: Complemental strand, 23367470 - 23367160
Alignment:
| Q |
23 |
gacgcgaatatgaaaaactgcaaatattggaaaactgacgttacatataaaagaaaggaaaatgagaagatgccattcaaaattcaagacacaataaaac |
122 |
Q |
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| T |
23367470 |
gacgcgaatatgaaaaactgcaaatattggaaaactgacgttacatataaaagaaaggaaaatgagaagatgccattcaaaattcaagacacaataaaac |
23367371 |
T |
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| Q |
123 |
taacacatctcaagtaaataacggtagaattcaaaaccaaacaaaatataaagaactgaaaacttaaagttcttgtatcgttgtccattgcaaactttct |
222 |
Q |
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| T |
23367370 |
taacacatctcaagtaaataacggtagaattcaaaatcaaacaaaatataaaaaactgaaaacttaaagttcttgtatcgttgtccattgcaaactttct |
23367271 |
T |
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| Q |
223 |
ctaataaacttaaaacaaacaacaaaatgcatacttttctcatttctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgtt |
322 |
Q |
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| T |
23367270 |
ctaataaacttaaaacaaacaacaaaatgcatacttttctcatttctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgtt |
23367171 |
T |
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| Q |
323 |
gaagttaaagc |
333 |
Q |
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| T |
23367170 |
gaagttaaagc |
23367160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 235 - 324
Target Start/End: Complemental strand, 22626719 - 22626630
Alignment:
| Q |
235 |
aaacaaacaacaaaatgcatacttttctcatttctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgttga |
324 |
Q |
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| T |
22626719 |
aaacacacaacaaagtgtaaactcttttcatttctcctccttaacttcagttaacatgtgagccaaaccatttgttagggcagatgttga |
22626630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 333
Target Start/End: Original strand, 23326045 - 23326114
Alignment:
| Q |
264 |
atttctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgttgaagttaaagc |
333 |
Q |
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| T |
23326045 |
atttctcctccttaacttcggttaacagatgagcaagtccatttgttagagcagatgttgaagtcaaagc |
23326114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 335
Target Start/End: Original strand, 23334747 - 23334815
Alignment:
| Q |
267 |
tctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgttgaagttaaagctg |
335 |
Q |
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| T |
23334747 |
tctcctctttaacttcagttatgaagtgagcaagaccatttgttagagcagatgttgaagtcaaagctg |
23334815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 333
Target Start/End: Original strand, 22632529 - 22632600
Alignment:
| Q |
262 |
tcatttctcctccttaacttcagttaaaaggtgagctagaccatttgtaagtgcagatgttgaagttaaagc |
333 |
Q |
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| T |
22632529 |
tcatttctcctccttaacttcagttcacatgtgagccaaaccatttgttagagcagaagttgaagtcaaagc |
22632600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 309
Target Start/End: Original strand, 23249892 - 23249942
Alignment:
| Q |
259 |
ttctcatttctcctccttaacttcagttaaaaggtgagctagaccatttgt |
309 |
Q |
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||||||||| ||| |||||||||||||||| | ||||||||||||||||| |
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| T |
23249892 |
ttctcatttttccaccttaacttcagttaacaactgagctagaccatttgt |
23249942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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