View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11238_low_15 (Length: 313)
Name: NF11238_low_15
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 270
Target Start/End: Complemental strand, 35408963 - 35408707
Alignment:
| Q |
6 |
tgcattgagattttaggtcttacatggattgtatatctcatgagttttggttgttctgtcatcttaattcttaatagtgttggatgcatatttgagctac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35408963 |
tgcattgagattttaggtcttacatggattgtatatctcatgagttttggttgttctgtcatcttaat-------agtgttggatgcatatttgagctac |
35408871 |
T |
|
| Q |
106 |
catttcctcttctttctttaactttattattttagaaaaatatttttactttggcaggagacgaaaaagagactgaactaaacattttaacaaaagccat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408870 |
catttcctcttctttctttaactttattattttagaaaaatatttttactttggcag-acaagaaaaagagactgaactaaacattttaacaaaagccat |
35408772 |
T |
|
| Q |
206 |
tttttaaaaattcaataaacaaagcatttgacatacaaatacatactggaaaatacaattaacag |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35408771 |
tttttaaaaattcaataaacaaagcatttgacatacaaatacatactggaaaatacaattaacag |
35408707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University