View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_low_17 (Length: 298)
Name: NF11238_low_17
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 6037799 - 6038058
Alignment:
| Q |
1 |
acgaaatgagacatgcatatctggtttccattcatcactttattgaagaaaaatgagtagactgatgtgattgtcaatatcaagaaagctgtatgaactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037799 |
acgaaatgagacatgcatatctggtttccattcatcactttattgaagaaaaatgagtagactgatgtgattgtcaatatcaagaaagctgtatgaactt |
6037898 |
T |
|
| Q |
101 |
tgaacaaaagacttctagagtggttccatatatttgcatataaaatcatgagccagatgatgaaactgataacagtataatgaaagttgtgtgtcaacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6037899 |
tgaacaaaagacttctagagtggttccatatatttgcatataaaatcatgagccagatgatgaaactgataacagtataatgaaagttgtgtgtcaacta |
6037998 |
T |
|
| Q |
201 |
gtttctgaaaagtaggctaatgtcatttacttttagacttccttgtttgatgagttaagc |
260 |
Q |
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| T |
6037999 |
gtttctgaaaagtaggctaatgtcatttacttttagacttccttgtttgatgagttaagc |
6038058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 31475792 - 31475943
Alignment:
| Q |
25 |
tttccattcatcactttattgaagaaaaatgagtagactgatgtgattgtcaatatcaagaaagctgtatgaactttgaacaaaagacttctagagtggt |
124 |
Q |
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|||||||| | |||||||| |||| ||||||| ||||| || ||||||||||||| || |||||||||||| |||||||| |||||||||||| || | |
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| T |
31475792 |
tttccatttaccactttatcgaagtaaaatgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaagacttctagactgtt |
31475891 |
T |
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| Q |
125 |
tccatatatttgcatataaaatcatgagccagatgatgaaactgataacagt |
176 |
Q |
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| T |
31475892 |
tccatatattttcatacaaaatcatgatgcaaatgatgaaactgaaaacagt |
31475943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 25 - 151
Target Start/End: Original strand, 31407273 - 31407399
Alignment:
| Q |
25 |
tttccattcatcactttattgaagaaaaatgagtagactgatgtgattgtcaatatcaagaaagctgtatgaactttgaacaaaagacttctagagtggt |
124 |
Q |
| |
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|||||||||| |||||||| ||||||||||| ||||| || ||||||||||||| || |||||||||||| |||||||| |||||||||||||| | |
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| T |
31407273 |
tttccattcaccactttatcaaagaaaaatgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaagacttctagagtttt |
31407372 |
T |
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| Q |
125 |
tccatatatttgcatataaaatcatga |
151 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
31407373 |
tccatatatttgcatacaaaatcatga |
31407399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 40843174 - 40843325
Alignment:
| Q |
25 |
tttccattcatcactttattgaagaaaaatgagtagactgatgtgattgtcaatatcaagaaagctgtatgaactttgaacaaaagacttctagagtggt |
124 |
Q |
| |
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|||||||| | |||||||| |||| |||| || ||||| || ||||||||||||| || |||||||||||| |||||||| |||||||||||| || | |
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| T |
40843174 |
tttccatttaccactttatcgaagtaaaacgaatagacagaggtgattgtcaatactaaaaaagctgtatgagctttgaaccgaagacttctagactgtt |
40843273 |
T |
|
| Q |
125 |
tccatatatttgcatataaaatcatgagccagatgatgaaactgataacagt |
176 |
Q |
| |
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||||||||||| |||| |||||||||| || ||||||||||||| |||||| |
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|
| T |
40843274 |
tccatatattttcatacaaaatcatgatgcaaatgatgaaactgaaaacagt |
40843325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 31493983 - 31494127
Alignment:
| Q |
25 |
tttccattcatcactttattgaagaaaaatgagtagactgatgtgattgtcaatatcaagaaagctgtatgaactttgaacaaaagacttctagagtggt |
124 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| ||||| || |||||||| |||| || |||||||||||| |||||||| ||| ||||| |||| | |
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| T |
31493983 |
tttccattcaccactttaccaaagaaaaatgaatagacagaggtgattgttaataccagaaaagctgtatgagctttgaaccgaagccttcttgagtttt |
31494082 |
T |
|
| Q |
125 |
tccatatatttgcatataaaatcatgagccagatgatgaaactga |
169 |
Q |
| |
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|||||||| |||||| ||||||||||| |||||||||||||||| |
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| T |
31494083 |
gccatatatgtgcatacaaaatcatgaggcagatgatgaaactga |
31494127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 31416397 - 31416540
Alignment:
| Q |
25 |
tttccattcatcactttattgaagaaaaatgagtagactgatgtgattgtcaatatcaagaaagctgtatgaactttgaacaaaagacttctagagtggt |
124 |
Q |
| |
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||||||||||| | ||||| |||||||||| ||||| | ||||||||||||| | |||||||||||| |||||||| |||||||||||||| | |
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| T |
31416397 |
tttccattcataattttatcagagaaaaatgaatagacagcagtgattgtcaatactagaaaagctgtatgagctttgaaccgaagacttctagagtttt |
31416496 |
T |
|
| Q |
125 |
tccatatatttgcatataaaatcatgagccagatgatgaaactg |
168 |
Q |
| |
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|||| |||||||||| ||||||| ||| ||||||||||||||| |
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| T |
31416497 |
gccatgtatttgcatacaaaatcaggaggcagatgatgaaactg |
31416540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 145
Target Start/End: Complemental strand, 31288714 - 31288606
Alignment:
| Q |
37 |
actttattgaagaaaaatgagtagactgatgtgattgtcaatatcaagaaagctgtatgaactttgaacaaaagacttctagagtggttccatatatttg |
136 |
Q |
| |
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||||||| |||||||||||| || | ||| |||||||| |||| |||||||||||| ||| |||||||| || | |||| ||||| |||||||| ||| |
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| T |
31288714 |
actttatcgaagaaaaatgaatacagtgaggtgattgtaaataccaagaaagctgtctgagctttgaaccgaatagttcttgagtgtttccatatcattg |
31288615 |
T |
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| Q |
137 |
catataaaa |
145 |
Q |
| |
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|| |||||| |
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| T |
31288614 |
caaataaaa |
31288606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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