View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_low_21 (Length: 261)
Name: NF11238_low_21
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_21 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 44314235 - 44314009
Alignment:
| Q |
19 |
gtgcatagtgacctatcttaccacatacataacagtgtcctccatttccatttttgaaagtgggattagtaacacgaggaacataattatttttattgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
44314235 |
gtgcatagtgacctatcttaccacatacataacaatgtcctccatttccatttgtgaaagtgggattagtaacacgaggaacatgattatttttatagtg |
44314136 |
T |
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| Q |
119 |
accagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctggccttggtagcc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44314135 |
accagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctggccttggcagcc |
44314036 |
T |
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| Q |
219 |
ctgctctcctttcggttggtatcctct |
245 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
44314035 |
ctgctctcctttcggttggtattctct |
44314009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 34098657 - 34098883
Alignment:
| Q |
19 |
gtgcatagtgacctatcttaccacatacataacagtgtcctccatttccatttttgaaagtgggattagtaacacgaggaacataattatttttattgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||| |
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| T |
34098657 |
gtgcatagtgacctatcttaccacatacataacaatgtcctccatttccatttgtgaaagtgggattagtaacacgaggaacatgattatttttatagtg |
34098756 |
T |
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| Q |
119 |
accagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctggccttggtagcc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34098757 |
accagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctggccttggcagcc |
34098856 |
T |
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| Q |
219 |
ctgctctcctttcggttggtatcctct |
245 |
Q |
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| T |
34098857 |
ctgctctcctttcggttggtattctct |
34098883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 40337 - 40563
Alignment:
| Q |
19 |
gtgcatagtgacctatcttaccacatacataacagtgtcctccatttccatttttgaaagtgggattagtaacacgaggaacataattatttttattgtg |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
40337 |
gtgcatagtgacctttcttaccacatacataacagtgtcctccatttccattttcgaaagagggattagtaacacgaggaacatgattatttttattgtg |
40436 |
T |
|
| Q |
119 |
accagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctggccttggtagcc |
218 |
Q |
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||||| |||| ||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
40437 |
accaggtttatgattaggtttgttatcatacctctttttctaattagtgttgttttggatcagatttgcttgggaagctaaagccctggctttggcagcc |
40536 |
T |
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| Q |
219 |
ctgctctcctttcggttggtatcctct |
245 |
Q |
| |
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|||||||||||| |||||||||||||| |
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| T |
40537 |
ctgctctcctttaggttggtatcctct |
40563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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