View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_low_24 (Length: 244)
Name: NF11238_low_24
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_24 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 244
Target Start/End: Original strand, 6968796 - 6969031
Alignment:
| Q |
10 |
atggacat-catattgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatctgagtattgaatctcatcctttgttcgagacga |
108 |
Q |
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| T |
6968796 |
atggacatgcatattgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatctgagtattgaatctcatcctttgttcgagacga |
6968895 |
T |
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| Q |
109 |
ttcaacgcttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcctaaggtagctgatgaagatgttgaggcatcattggagag |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6968896 |
ttcaacgcttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcctaaggtagctgaggaagatgttgaggcatcattggagag |
6968995 |
T |
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| Q |
209 |
gttgatccaagcacttagaacctccaaggaagaagc |
244 |
Q |
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| T |
6968996 |
gttgatccaagcacttagaacctccaaggaagaagc |
6969031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 1000455 - 1000231
Alignment:
| Q |
18 |
catattgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatctgagtattgaatctcatcctttgttcgagacgattcaacgct |
117 |
Q |
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| T |
1000455 |
catattgagttgtcttattgtggttttgatggattcaaaatgctagcaatgagttatctgagtattgaatctcatcctttgttcaagacggttcgatgct |
1000356 |
T |
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| Q |
118 |
tgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcctaaggtagctgatgaagatgttgaggcatcattggagagg--ttgatc |
215 |
Q |
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| T |
1000355 |
tgttggaagagaccaacataactcaggctgatgttgctgaaaacttgatgcctaaggtagct-atgaagatgttgaggcatcattggagaggctttgatc |
1000257 |
T |
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| Q |
216 |
caagcacttagaacctccaaggaaga |
241 |
Q |
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| T |
1000256 |
caagcacttagaacctctaaggaaga |
1000231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 51316266 - 51316041
Alignment:
| Q |
18 |
catattgagttgtcttactgtggttttgatggattcaaaatgttggcaatgaattatctgagtattgaatctcatcctttgttcgagacgattcaacgct |
117 |
Q |
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| T |
51316266 |
catattgaattgtcttattgtggttttgatggattcaaaatgttggcaatgaattatctgagtcttgaatctcattttttgctcgagacgattagatgct |
51316167 |
T |
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| Q |
118 |
tgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcctaaggtagctgatgaagatgttgaggcatcattggagaggttgatcc- |
216 |
Q |
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|||||||||||||||| ||||| || |||||||||||| |||||||||||||||||||| || |||||||||||||| | ||||||||||||||||| | |
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| T |
51316166 |
tgttggaagagactaatatgacaccagctgatgttgctaaaaacttgatgcctaaggtatctaatgaagatgttgagacctcattggagaggttgataca |
51316067 |
T |
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| Q |
217 |
-aagcacttagaacctccaaggaaga |
241 |
Q |
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|||| ||||||| ||| |||||||| |
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| T |
51316066 |
aaagcccttagaagctctaaggaaga |
51316041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 228
Target Start/End: Original strand, 2178109 - 2178306
Alignment:
| Q |
31 |
cttactgtggttttgatggattcaaaatgttggcaatgaattatctgagtattgaatctcatcctttgttcgagacgattcaacgcttgttggaagagac |
130 |
Q |
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|||| ||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| ||||||||| | |||| | ||||||||| |||||| |
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| T |
2178109 |
cttattgttgttttgatggattcaaaatgttggcaacgaagtatctgagtcttgaatctcattttttgttcgacaagattgcatgcttgttggtagagac |
2178208 |
T |
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| Q |
131 |
taacatgactccggctgatgttgctgaaaacttgatgcctaaggtagctgatgaagatgttgaggcatcattggagaggttgatccaagcacttagaa |
228 |
Q |
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| T |
2178209 |
taatatgacaccagctgatgttgctgaaaatttgatgccaaaggtagataatgaagatgttgcgactccattgttgaggttgattcaagcacttagaa |
2178306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 2842791 - 2842843
Alignment:
| Q |
117 |
ttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcc |
169 |
Q |
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| T |
2842791 |
ttgttggaagagactaatatgacacctgctgatgttgctgaaaatttgatgcc |
2842843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 2829385 - 2829437
Alignment:
| Q |
117 |
ttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcc |
169 |
Q |
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| T |
2829385 |
ttgttggaaaagactaatatgacacctgctgatgttgctgaaaatttgatgcc |
2829437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 2832829 - 2832777
Alignment:
| Q |
117 |
ttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcc |
169 |
Q |
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| T |
2832829 |
ttgttgggagagactaatatgacacctgctgatgttgctgagaatttgatgcc |
2832777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 2909536 - 2909484
Alignment:
| Q |
117 |
ttgttggaagagactaacatgactccggctgatgttgctgaaaacttgatgcc |
169 |
Q |
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| T |
2909536 |
ttgttgggagagactaatatgacacctgctgatgttgctgagaatttgatgcc |
2909484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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