View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_low_27 (Length: 242)
Name: NF11238_low_27
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_27 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 25339414 - 25339644
Alignment:
| Q |
17 |
agaatttgatacaccagtagcatacaagttagctttgaagacttgggctaattgggttgactcaactattaatccaaacaaaacaagggtcttcttcact |
116 |
Q |
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| T |
25339414 |
agaatttgatacaccagtagcatacaagttagctttgaagacttgggctaattgggttgactcaactattaatccaaacaaaacaagggtcttcttcact |
25339513 |
T |
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| Q |
117 |
acaatgtcacctacacacacaaggtctttctctcttctaaatattttcttagcttaaataactttttagtccttataatata-----aatttagttttag |
211 |
Q |
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| T |
25339514 |
acaatgtcacctacacacacaaggtctttctctcttctaaatattttcttggcttaaataactttttagtccttataatataaacttaatttagttttag |
25339613 |
T |
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| Q |
212 |
tcttgcaaatatcaacatttgttttagatct |
242 |
Q |
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| T |
25339614 |
tcttgcaaatatcaacatttgttttagatct |
25339644 |
T |
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Back To:
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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 5231901 - 5232022
Alignment:
| Q |
17 |
agaatttgatacaccagtagcatacaagttagctttgaagacttgggctaattgggttgactcaactattaatccaaacaaaacaagggtcttcttcact |
116 |
Q |
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|||| |||||||| || | || ||||| |||| ||||| ||| ||||| |||||||| ||||||||||| |||||||||||||| || ||||||||||| |
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| T |
5231901 |
agaacttgatacatcaattgcttacaacttaggtttgaggacatgggcaaattgggtggactcaactatcaatccaaacaaaactagagtcttcttcaca |
5232000 |
T |
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| Q |
117 |
acaatgtcacctacacacacaa |
138 |
Q |
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| T |
5232001 |
actatgtcccctgcacatacaa |
5232022 |
T |
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