View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_low_28 (Length: 241)
Name: NF11238_low_28
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 37953897 - 37954108
Alignment:
| Q |
19 |
actacgaaggtctgtcctatgtttctgaagttccatttgttgtcattgatcttataaaccttcgagaagtccaagtagatgtagaaaagagaagtgcatg |
118 |
Q |
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| T |
37953897 |
actacgaaggtctgtcctatgtttctgaagttccatttgttgtcattgatcttataaaccttcgagaagtccaagtagatgtagaaaagagaagtgcatg |
37953996 |
T |
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| Q |
119 |
ggttcaaggaggggcaactgctggcgaacttttgtacaaaattagccaaaaaagcaaaactcttggcttccctgcaggtatttgccctaccgtaggtgtt |
218 |
Q |
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| T |
37953997 |
ggttcaaggaggggcaactgctggcgaacttttgtacaaaattagccaaaaaagcaaaactcttggcttccctgcaggtatttgccctaccgtaggtgtt |
37954096 |
T |
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| Q |
219 |
agcggacttatc |
230 |
Q |
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| T |
37954097 |
agcggacttatc |
37954108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 218
Target Start/End: Original strand, 38086081 - 38086272
Alignment:
| Q |
27 |
ggtctgtcctatgtttctgaagttccatttgttgtcattgatcttataaaccttcgagaagtccaagtagatgtagaaaagagaagtgcatgggttcaag |
126 |
Q |
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| T |
38086081 |
ggtctgtcttatgtctctgaagttccatttgttgtcattgatctcataaacttcagagaaattgaaataaatgtacacaaaaaaactgcatgggttcaat |
38086180 |
T |
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| Q |
127 |
gaggggcaactgctggcgaacttttgtacaaaattagccaaaaaagcaaaactcttggcttccctgcaggtatttgccctaccgtaggtgtt |
218 |
Q |
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| T |
38086181 |
ctggtgcaacacttggtgaactttactacgcaattagccaaaaaagcaaaactcttggtttccctgcaagtgtttgtcctactgtaggtgtt |
38086272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 218
Target Start/End: Original strand, 38072637 - 38072762
Alignment:
| Q |
93 |
gtagatgtagaaaagagaagtgcatgggttcaaggaggggcaactgctggcgaacttttgtacaaaattagccaaaaaagcaaaactcttggcttccctg |
192 |
Q |
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|||||||||||||| |||| ||| ||||||||| || ||||| ||| ||||||| ||||||||| ||||||||||||||||||||| ||||||| |
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| T |
38072637 |
gtagatgtagaaaacagaactgcttgggttcaatctggtgcaacccttggtgaactttactacaaaattgcccaaaaaagcaaaactcttggtttccctg |
38072736 |
T |
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| Q |
193 |
caggtatttgccctaccgtaggtgtt |
218 |
Q |
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| T |
38072737 |
gaggtgtttgtcctactgtaggtgtt |
38072762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 38081662 - 38081706
Alignment:
| Q |
33 |
tcctatgtttctgaagttccatttgttgtcattgatcttataaac |
77 |
Q |
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| T |
38081662 |
tcctatgtttcagaaattccatttgttgtcattgatctcataaac |
38081706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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