View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11238_low_29 (Length: 241)
Name: NF11238_low_29
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 47268195 - 47267982
Alignment:
| Q |
13 |
cacagacgacaaacaaaaagataaacatgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacc |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47268195 |
cacaaacgacaaacaaaaagataaacatgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacc |
47268096 |
T |
|
| Q |
113 |
tcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctacattcatatgtgggatgatataggctgctccaggaaaaggccc |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47268095 |
tcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctacattcttatgtgggatgatataggctgctccaggaaaaggccc |
47267996 |
T |
|
| Q |
213 |
agccccactttttg |
226 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
47267995 |
agccccactttttg |
47267982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 39 - 225
Target Start/End: Complemental strand, 47284133 - 47283948
Alignment:
| Q |
39 |
atgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaa |
138 |
Q |
| |
|
||||||||||||||| ||| | | | |||||| |||||| ||||||| ||||| ||||||||||| |||||||||||||||| ||||| ||| || || |
|
|
| T |
47284133 |
atgacaaaactagga-ccaatcgttgtaggttgattttgattaccaaacatcttatctaactcttcagcaaacctcttcataacttcagaggttaagaaa |
47284035 |
T |
|
| Q |
139 |
actagtaatatgaaaccttcttctccttctacattcatatgtgggatgatataggctgctccaggaaaaggcccagccccacttttt |
225 |
Q |
| |
|
| ||||||||| |||||||||||||||||| ||||| |||||||||| ||||| | ||||||||| ||||| |||||||||| |||| |
|
|
| T |
47284034 |
attagtaatattaaaccttcttctccttctgcattcttatgtgggattatatacgttgctccaggtaaaggtccagccccacctttt |
47283948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 226
Target Start/End: Original strand, 47298719 - 47298873
Alignment:
| Q |
72 |
attttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctaca |
171 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | |||| || ||| ||||||||||| || | |
|
|
| T |
47298719 |
attttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctccttttata |
47298818 |
T |
|
| Q |
172 |
ttcatatgtgggatgatataggctgctccaggaaaaggcccagccccactttttg |
226 |
Q |
| |
|
||| ||| ||||| |||||||| ||||||||||||||| |||||||||| ||||| |
|
|
| T |
47298819 |
ttcttatatgggacgatataggttgctccaggaaaaggtccagccccaccttttg |
47298873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 212
Target Start/End: Complemental strand, 47279540 - 47279368
Alignment:
| Q |
39 |
atgacaaaactaggaaccacttgctttaggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaa |
138 |
Q |
| |
|
|||||||||||||| ||| ||| | |||||| |||||| ||||||| ||||| ||||||||||| |||||||||||||||| ||||| ||| || || |
|
|
| T |
47279540 |
atgacaaaactaggc-ccaattgttgtaggttgattttggttaccaaacatcttatctaactcttcagcaaacctcttcataacttcagaggttaagaaa |
47279442 |
T |
|
| Q |
139 |
actagtaatatgaaaccttcttctccttctacattcatatgtgggatgatataggctgctccaggaaaaggccc |
212 |
Q |
| |
|
| ||||||||| |||||||||||||||||| ||||| |||||||||||||| | | ||||| ||| |||||||| |
|
|
| T |
47279441 |
attagtaatatcaaaccttcttctccttctgcattcttatgtgggatgataaacgttgctctaggtaaaggccc |
47279368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 65 - 226
Target Start/End: Original strand, 47292105 - 47292266
Alignment:
| Q |
65 |
taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc |
164 |
Q |
| |
|
|||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| |||||||| | |||| || ||| ||||||||| |
|
|
| T |
47292105 |
taggataattttggttaccaagcatctcatccaactcttttgcaaacctcttcatatcttcagagggcaaacaaattggtaacatcaaagtttcttctcc |
47292204 |
T |
|
| Q |
165 |
ttctacattcatatgtgggatgatataggctgctccaggaaaaggcccagccccactttttg |
226 |
Q |
| |
|
| || |||| ||| ||||| |||||||| || ||||||||| | |||||||||| ||||| |
|
|
| T |
47292205 |
atttatattcttatatgggacgatataggttgatccaggaaatgttccagccccaccttttg |
47292266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 65 - 193
Target Start/End: Complemental strand, 47243239 - 47243111
Alignment:
| Q |
65 |
taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc |
164 |
Q |
| |
|
|||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| || ||| |||| | ||||||| || ||||||||||| |
|
|
| T |
47243239 |
taggataattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggtaatattaacccttcttctcc |
47243140 |
T |
|
| Q |
165 |
ttctacattcatatgtgggatgatatagg |
193 |
Q |
| |
|
|| | ||||| |||| |||| ||||||| |
|
|
| T |
47243139 |
ttttgcattcttatgcgggacaatatagg |
47243111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 47257366 - 47257252
Alignment:
| Q |
65 |
taggttaattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctcc |
164 |
Q |
| |
|
|||| |||||||| ||||||||||| ||||||||||| ||| |||||||||||||| ||||| | ||| |||| | ||||||| || ||||||||||| |
|
|
| T |
47257366 |
taggataattttggttaccaagcatatcatctaactccttaacaaacctcttcatatcttcaggaggcaagcaaattggtaatattaacccttcttctcc |
47257267 |
T |
|
| Q |
165 |
ttctacattcatatg |
179 |
Q |
| |
|
|| | ||||| |||| |
|
|
| T |
47257266 |
ttttgcattcttatg |
47257252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 32731900 - 32731778
Alignment:
| Q |
71 |
aattttgtttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttctccttctac |
170 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||| || ||| |||| | | ||||| || ||||||||||||| | | |
|
|
| T |
32731900 |
aattttggttaccaagcatatcatctaactctttagcaaacctcttcatatcttcagggggcaagcaaattggaaatattaacccttcttctccttttgc |
32731801 |
T |
|
| Q |
171 |
attcatatgtgggatgatatagg |
193 |
Q |
| |
|
|||| |||| |||| ||||||| |
|
|
| T |
32731800 |
attcttatgcgggacaatatagg |
32731778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 79 - 162
Target Start/End: Complemental strand, 20519901 - 20519818
Alignment:
| Q |
79 |
ttaccaagcatctcatctaactctttagcaaacctcttcatagcttcaaaggacaaacaaactagtaatatgaaaccttcttct |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| | | |||| ||| | ||||||| ||||||| |||| |
|
|
| T |
20519901 |
ttaccaagcatctcatctaactctttagcaaacctcttcatatcttcataaggcaaagaaattggtaatattaaacctttttct |
20519818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University