View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_low_36 (Length: 227)
Name: NF11238_low_36
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 50149043 - 50149269
Alignment:
| Q |
1 |
atttctggcatttcttagtttgtatgtcttcacattaggtatgttacataaagttaataaacattagaaattgannnnnnnaaaatgttcagttattgca |
100 |
Q |
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| T |
50149043 |
atttctggcatttcttagtttgtatgtcttcacattaggtatgttacataaagttaataaacattagaaattgatttttttaaaatgttcagtcattgca |
50149142 |
T |
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| Q |
101 |
ctgtaaaaccaaattaattgtcatctaattggtagtagggctggctgccatgatgttattcattcatatttctaaagaaaatcattggtttatgcacagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50149143 |
ctgtaaaaccaaattaattgtcatctaattggtagtagggctggctgccatgatgtcattcattaatatttctaaagaaaatcattggtttatgcacagt |
50149242 |
T |
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| Q |
201 |
ttataaacaccacacttctcaacccac |
227 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
50149243 |
ttatgaacaccacacttctcaacccac |
50149269 |
T |
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