View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_low_4 (Length: 529)
Name: NF11238_low_4
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 16 - 526
Target Start/End: Complemental strand, 29979823 - 29979314
Alignment:
| Q |
16 |
acaaagatcattaattaagttagaagagatattttaccatttcatttaagtttccttatgtgcaaacttgatgtttggttcattataaagggattgtatt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29979823 |
acaaagatcattaattaagttagaagagatattttaccgtttcatttaagtttccttatgtgcaaacttgatgtttggttcattataaagggattgtatt |
29979724 |
T |
|
| Q |
116 |
tcgtatcnnnnnnnnnnnntgttttgtctattcatgtttacttgttccacccaaccctcaattgttgttttgaggtcagattctattatttccgcaatat |
215 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29979723 |
tcgtatcaaaaaaaaaaaatgttttgtctattcatgtttacttgttccacccaaccctcaattgttgttttgaggtcagattctattatttccgcaatat |
29979624 |
T |
|
| Q |
216 |
cttcccttactttgagccgtccctattgccagagcacacgtacattatgccaccatatttctttatctaacttattgtacatctttaataaattatttat |
315 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29979623 |
cttcc-ttactttgagccgtccctcttgccagagcacacgtacattatgccaccatatttctttatctaacttattgtacagctttaataaattatttat |
29979525 |
T |
|
| Q |
316 |
gccatattgctaatttgatatgcaacatgattacccatatcatatacttattgtttttgtgtgttcatgtgcacatgactgtttaggccatgatgggtgt |
415 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29979524 |
gccatattgctaatttgatatgcaacatgatcacccatatcatatacttattgtttttgtgtgttcatgtgcacatgactgtttaggccatgatgggtgt |
29979425 |
T |
|
| Q |
416 |
attgtccccttcttgaagtgacatggcacctcataagggcctatataaaatcctaacttcccttgctcatacaatcaattcatcttgagcctttttctct |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
29979424 |
attgtccccttcttgaagtgacatggcacctcataagggcctatataaaatcctaacttcccttgctcatacaatcaattcatcttaagcctttttctct |
29979325 |
T |
|
| Q |
516 |
agctattctct |
526 |
Q |
| |
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||||||||||| |
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| T |
29979324 |
agctattctct |
29979314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 156 - 512
Target Start/End: Complemental strand, 29983980 - 29983626
Alignment:
| Q |
156 |
cttgttccacccaaccctcaattgttgttttgaggtcagattctattatttccgcaatatcttcccttactttgagccgtccctattgccagagcacacg |
255 |
Q |
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||||| |||||||||| | ||||| |||||| ||||||||||||| |||||| ||||||||| | |||||| |||| |||||| ||||||||||||||| |
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| T |
29983980 |
cttgtcccacccaacctt-aattgaggttttggggtcagattctatgatttccacaatatcttgc-ttacttcgagctgtccctgttgccagagcacacg |
29983883 |
T |
|
| Q |
256 |
tacattat----gccaccatatttctttatctaacttattgtacatctttaataaattatttatgccatattgctaatttgatatgcaacatgattaccc |
351 |
Q |
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| T |
29983882 |
tacattatttaggtcttcatatttcttaatctaatttatggtacaactttaatttgttatttatgccatattgcta-tttaatatgcaacatgatcaccc |
29983784 |
T |
|
| Q |
352 |
atatc-atatacttattgtttttgtgtgttcatgtgcacatgactgtttaggccatgatgggtgtattgtccccttcttgaagtgacatggcacctcata |
450 |
Q |
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| T |
29983783 |
atatccatataattattatttttatgtgttcatgtgcacatgactctttgggccatggtggatgtaacgtacccttcttgaagtgacgtggcacttcatt |
29983684 |
T |
|
| Q |
451 |
agggcctatataaaatcctaacttcccttgctcatacaatcaattcatcttgagcctttttc |
512 |
Q |
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| |||||||||||| || || |||| ||||||||||| ||||||||| |||||||||| |
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| T |
29983683 |
aatgcctatataaaacccaaatttcc----ctcatacaatccattcatcttaagcctttttc |
29983626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 149 - 510
Target Start/End: Complemental strand, 29993734 - 29993378
Alignment:
| Q |
149 |
atgtttacttgttccacccaaccctcaattgttgttttgaggtcagattctattatttccgcaatatcttcccttactttgagccgtccctattgccaga |
248 |
Q |
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|||||| ||||| |||||||||| ||||||| ||||||| |||||||||||| |||||| ||||||||| | |||| || |||| |||||||| |
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| T |
29993734 |
atgtttccttgtcccacccaacc-tcaattgatgttttggggtcagattctacgatttccacaatatcttgt-tcacttcaagtggtccttattgccact |
29993637 |
T |
|
| Q |
249 |
gcacacgtacattatgccaccatatttctttatctaacttattgtacatctttaataaattatttatgccatattgctaatttgatatgcaacatgatta |
348 |
Q |
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||||||||||||||| ||||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| | |
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| T |
29993636 |
--acacgtacattatgctcccatatttctttatctatct-attgtatatctttaatttattatttatgccatattgctaagctgatatgcaacatgatca |
29993540 |
T |
|
| Q |
349 |
cccatatcatatacttattgtttttgtg-tgttcatgtgcacatgactgtttaggccatgatgggtgtattgtccccttcttgaagtgacatggcacctc |
447 |
Q |
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|||||||| || | |||| || || | | || ||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||| || |||||| |
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| T |
29993539 |
cccatatcc-atccatattattattattatttttgggtgcaaatgactgtttaggtcatgatgggtgtaatgttcccttcttgaagtgatgtgccacctc |
29993441 |
T |
|
| Q |
448 |
ataagggcctatataaaatcctaacttcccttgctcatacaatcaattcatcttgagcctttt |
510 |
Q |
| |
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|| || |||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||| |
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|
| T |
29993440 |
atgagtgcctatataaaaccctaacttcccttggtcatactatcaattcatcttaagcctttt |
29993378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 383 - 516
Target Start/End: Complemental strand, 29973861 - 29973728
Alignment:
| Q |
383 |
tgtgcacatgactgtttaggccatgatgggtgtattgtccccttcttgaagtgacatggcacctcataagggcctatataaaatcctaacttcccttgct |
482 |
Q |
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||||||||||||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||| |
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| T |
29973861 |
tgtgcacatgactgtttgggtcatgatgggtgtaatgtccccttcttgaagtgacgtggcacctcatgaatgcctatataaaaccctaacttcccttgca |
29973762 |
T |
|
| Q |
483 |
catacaatcaattcatcttgagcctttttctcta |
516 |
Q |
| |
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||||||||||||| ||||| |||||||||||||| |
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| T |
29973761 |
catacaatcaatttatcttaagcctttttctcta |
29973728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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