View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_low_6 (Length: 470)
Name: NF11238_low_6
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 37 - 460
Target Start/End: Complemental strand, 44080328 - 44079907
Alignment:
| Q |
37 |
gcaattatattcaatagcgtttgaatgaggtgattcaagacttttaattaaaggttttaggtttaaatcttacctatgcgttattattaaattattgagg |
136 |
Q |
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| T |
44080328 |
gcaattatattcaataacttttgaatgaggtgattcaagacttttaattaaaggttttaggtttaaatcttacctatacgttattattaaattattgagg |
44080229 |
T |
|
| Q |
137 |
atggctttgtaattgtaattttttatgaacttatccgagttaatagattaatctattgtgaatgataaactttaaaatgacggtgttagaaagtagcaat |
236 |
Q |
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| T |
44080228 |
atggctttgtaattgtaattttttgtgaacttatccgagttgatagattaatctattgtgaatgataaacttaaaaatgacggtgatagaaagtagcaat |
44080129 |
T |
|
| Q |
237 |
ttggggaaaaaagatggcatggcaatggcacccaaaatggggtgcgccaattgagaccaagacaggggaaaaggatcaatnnnnnnnnnnnngtgaaact |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44080128 |
ttggggaaaaaagatggcatggcaatggcacccaaaatggggtgcgccaattgagaccaagacaggggaaaaggatcaat--aaaaaaaaaagtgaaact |
44080031 |
T |
|
| Q |
337 |
gttatccaacaaggatgaacgtgggtaacagtgattggaaggatggagaaactgagtaatggagataggggaccttggcagctgagttgatgtgatgtgc |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44080030 |
gttatccaacaaggatgaacgtgggtaacagtgattggaaggatggagaaactgaggaatggagataggggaccttggcagctgagttgatgtgatgtgc |
44079931 |
T |
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| Q |
437 |
atctataaggtgtaacattctgtg |
460 |
Q |
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| T |
44079930 |
atctataaggtgtaacattctgtg |
44079907 |
T |
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