View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11238_low_9 (Length: 420)
Name: NF11238_low_9
Description: NF11238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11238_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 5177927 - 5177537
Alignment:
| Q |
18 |
atatttgcatctcaatcattatgcagttgaaaaccatatgttaacaatatacataaccatataatttaactttgtaaaatcaggaaaagcagtggattct |
117 |
Q |
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| T |
5177927 |
atatttgcatctcaatcattatgcagttgaaaaccatatgttaacaatatacataaccatataatttaactttgtaaaatcaggaaaagcagtggattct |
5177828 |
T |
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| Q |
118 |
caagaggggcttccatgtatagaggagtaacaaggtgagtctaacatcacatgcattgcactaatttaattttaatatatgatttatatatgaaaaataa |
217 |
Q |
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| T |
5177827 |
caagaggggcttccatgtatagaggagtaacaaggtgagtctaacatcacatgcattgcactaatttaattt-aatatatgatttatatatgaaaaataa |
5177729 |
T |
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| Q |
218 |
aattggctctgattattatctttgtagcagacaccatcaacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttgga |
317 |
Q |
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| T |
5177728 |
aattggctctgattattatctttgtagcagacatcatcaacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttgga |
5177629 |
T |
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| Q |
318 |
actttcagtgagtatactctcacatttttggttattctttcttttgtgattgtgaccaatatatttgagaaatgatatttttggttattcat |
409 |
Q |
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| T |
5177628 |
actttcagtgagtatactctcacatttttggttattctttcttttgtgattgtaaccaatatatttgagaaatgatatttttggttattcat |
5177537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 40190506 - 40190594
Alignment:
| Q |
242 |
tagcagacaccatcaacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagtgagt |
330 |
Q |
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| T |
40190506 |
tagcagacatcaccaacatggaagatggcaagctagaattggtagagtggctggtaataaagatctatatcttggaactttcagtgagt |
40190594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 96 - 153
Target Start/End: Original strand, 40190344 - 40190401
Alignment:
| Q |
96 |
atcaggaaaagcagtggattctcaagaggggcttccatgtatagaggagtaacaaggt |
153 |
Q |
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| T |
40190344 |
atcagaaaaagcagtggattctcaagaggggcatccatgtacagaggagtaacaaggt |
40190401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 326
Target Start/End: Complemental strand, 24562180 - 24562109
Alignment:
| Q |
255 |
caacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagt |
326 |
Q |
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| T |
24562180 |
caacatggaagatggcaagcaaggattggcagagttgcaggaaataaagatctatacttgggaactttcagt |
24562109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 244 - 326
Target Start/End: Complemental strand, 30618771 - 30618689
Alignment:
| Q |
244 |
gcagacaccatcaacatggaagatggcaagctcgaatagggagagttgctggaaataaagatctctatcttggaactttcagt |
326 |
Q |
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||||||| ||||||||||| |||||||||||| | || || |||||||| || || ||||||||||| || |||||||||||| |
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| T |
30618771 |
gcagacatcatcaacatggtagatggcaagctaggattggaagagttgcaggcaacaaagatctctacctaggaactttcagt |
30618689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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