View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11239_high_4 (Length: 265)
Name: NF11239_high_4
Description: NF11239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11239_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 43918416 - 43918169
Alignment:
| Q |
18 |
tgtatgtttttctcctcctttgtcacgaagcaactcaaccggttcagcgccaaatctaaagagaacgagttcgaatagacaacaatcatcactatcttca |
117 |
Q |
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| T |
43918416 |
tgtatgtttttctcctcctttgtcacgaagcaactcaaccggttcagcgccaaatctaaagagaacgagttcgaatagacaacagtcatcactatcttca |
43918317 |
T |
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| Q |
118 |
tcatgttctaccttaaataatttgtatcctgtgcagaagtcttgttcaggtaagagttatggtaatggcctaaggtttagtcctgttttgaatgtaccaa |
217 |
Q |
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| T |
43918316 |
tcatgttctaccttaaataatttgtatcctgtgcagaagtcttgttcaggtaagagttatggtaatggcctaaggtttagtcctgttttgaatgtaccaa |
43918217 |
T |
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| Q |
218 |
ctccttgtttttcgaaaggaagtttaagtttatttgggctcggttcat |
265 |
Q |
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| T |
43918216 |
ctccttgtttttcgaaaggaagtttaagtttatttgggttcggttcat |
43918169 |
T |
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