View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11239_low_2 (Length: 408)
Name: NF11239_low_2
Description: NF11239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11239_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 19 - 398
Target Start/End: Complemental strand, 52877029 - 52876649
Alignment:
| Q |
19 |
attaaacatataccctgtaaagaataaagtcgtatttcaagtgaattatgtcaaataaaatcaaatagattcaataaatatctctatcatgagtgagttg |
118 |
Q |
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| T |
52877029 |
attaaacatataccctgtaaagaataaaatcgtatttcaagtgaattatgtcaaataaaatcaaatagattcaataaatatctctatcatgagtgagttg |
52876930 |
T |
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| Q |
119 |
taaaaatcatta--gagacaacaacaaaccatttttcaatgcgttgttgtagaaagtttgttatggaatcaagcaacgtataaagtttgtcaatgacaat |
216 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52876929 |
taaaaatcattattgagacaacaa-aaaccatttttcaatgcgttgttgtagaaagtttgttatggaatcaagcaacgtataaagtttgtcaatgacaat |
52876831 |
T |
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| Q |
217 |
acacaatcacaagaaactttgttggaaaaaatgcactatatgtgtttgtgcatacgtcaacatgttcatttttaagtatgtagacaagagggtgaaatgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52876830 |
acacaatcacaagaaactttgttggaaaaaatgcactatatgtgtttgtgcatacgtcaacatgttcatttttaagtatgtagacaagagggtgaaatgt |
52876731 |
T |
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| Q |
317 |
ataaaaaagaaaatcaatggaagtatgaagtcatcaacaaagttaaacctacgactaaaaatcagtgcaacttttgcctttg |
398 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52876730 |
ataaaaaagaaaatcaatgaaagtatgaagtcatcaacaaagttaaacctacgactaaaaatcagtgcaacttttgcctttg |
52876649 |
T |
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