View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1123_high_1 (Length: 669)

Name: NF1123_high_1
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1123_high_1
NF1123_high_1
[»] chr8 (13 HSPs)
chr8 (29-662)||(5887431-5888063)
chr8 (92-277)||(5843308-5843494)
chr8 (92-277)||(5850050-5850236)
chr8 (94-277)||(5960544-5960720)
chr8 (284-450)||(5850299-5850461)
chr8 (94-235)||(5921386-5921524)
chr8 (94-235)||(5984806-5984944)
chr8 (94-235)||(5949278-5949416)
chr8 (284-378)||(5843557-5843650)
chr8 (462-526)||(5850507-5850571)
chr8 (537-576)||(5850588-5850627)
chr8 (284-334)||(5985016-5985066)
chr8 (154-204)||(41351576-41351626)
[»] chr2 (1 HSPs)
chr2 (132-237)||(42789098-42789203)
[»] chr5 (1 HSPs)
chr5 (147-204)||(2590612-2590669)


Alignment Details
Target: chr8 (Bit Score: 448; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 29 - 662
Target Start/End: Original strand, 5887431 - 5888063
Alignment:
Q  29 atatacttaatgaaataataaagcacacttnnnnnnnnngtatagtggttaagaannnnnnncagtaccagcaagttttgggacagagctccagcagcaa 128  Q
    ||||||||||||||||| ||||||||||||         ||||||||||||||||       ||||||||||||||||||| ||||||||||||||||||    
T  5887431 atatacttaatgaaatagtaaagcacacttaaaaaaaa-gtatagtggttaagaatttttttcagtaccagcaagttttggtacagagctccagcagcaa 5887529  T
Q  129 tcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttctccttgttacagcaagagtgatgtc 228  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887530 tcttgtccataagttgtgatgtatttgatgagcttttcatcttcttcaggtgaccatagtcctctgttgaccttctccttgttacagcaagagtgatgtc 5887629  T
Q  229 ccatgattgatgtcttgtttcttttctccttagtttgatgaataagtcttttggcttagcttaagaacagaataggttgcattaaattatgaaatgaatg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887630 ccatgattgatgtcttgtttcttttctccttagtttgatgaataagtcttttggcttagcttaagaacagaataggttgcattaaattatgaaatgaatg 5887729  T
Q  329 gagtgagaagagtaacagnnnnnnnggatgatttataagcagatgaaactttgagtacactgaggtggtcagggggaaaggccatatagttcaataatga 428  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5887730 gagtgagaagagtaacagaaaaaaaggatgatttataagcagatgaaactttgagtacactgaggtggtcagggggaaaggccatatagttcaataatga 5887829  T
Q  429 gctaccccatattcttcttgttannnnnnncttatacttttatatttagctatcttaataatgtttatctagctatcccaatcaagtttctttgcaag-- 526  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  5887830 gctaccccatattcttcttgttatttttttcttatacttttatatttagctatcttaataatgtttatctagctatcccaatcaagtttctttgcaagaa 5887929  T
Q  527 -nnnnnnnnnntcacttaattgataaatttattcatcttattttgacacttcaaatcnnnnnnnngttaactctccggtagccaaggagaaggagaccct 625  Q
               ||||||||||||||||||||||||||||||||||||||||||||||        ||   ||||||||||||||||||||||||||||||    
T  5887930 aaaaaataaaatcacttaattgataaatttattcatcttattttgacacttcaaatcttttttttgt---ctctccggtagccaaggagaaggagaccct 5888026  T
Q  626 aatattctagaattcgtccgtgaagtaagtataatct 662  Q
    |||||||||||||||||||||||||||||||||||||    
T  5888027 aatattctagaattcgtccgtgaagtaagtataatct 5888063  T

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Target: chr8; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 92 - 277
Target Start/End: Original strand, 5843308 - 5843494
Alignment:
Q  92 agtaccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct 191  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5843308 agtaccagcaagttttgggacagaactccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct 5843407  T
Q  192 ctgttgaccttctccttgttacagcaagagtgatgtcccatgattgatgtcttg-tttcttttctccttagtttgatgaataagtct 277  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  5843408 ctgttgaccttctccttgctacagcaagagtgatgtgccatgattgatgtcttgttttcttttctccttagtttgatcaataagtct 5843494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 92 - 277
Target Start/End: Original strand, 5850050 - 5850236
Alignment:
Q  92 agtaccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct 191  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5850050 agtaccagcaagttttgggacagaactccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcct 5850149  T
Q  192 ctgttgaccttctccttgttacagcaagagtgatgtcccatgattgatgtcttg-tttcttttctccttagtttgatgaataagtct 277  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  5850150 ctgttgaccttctccttgctacagcaagagtgatgtgccatgattgatgtcttgttttcttttctccttagtttgatcaataagtct 5850236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 94 - 277
Target Start/End: Original strand, 5960544 - 5960720
Alignment:
Q  94 taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct 193  Q
    |||||||||||||||| ||||| ||||| || | ||   ||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  5960544 taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctct 5960640  T
Q  194 gttgaccttctccttgttacagcaagagtgatgtcccatgattgatgtcttgtttcttttctccttagtttgatgaataagtct 277  Q
     || |||||||  ||||| || ||||| ||||||| ||    |||||||| ||||||||||||||||||||||| || ||||||    
T  5960641 tttaaccttctgtttgttgcaacaagaatgatgtctca----tgatgtctagtttcttttctccttagtttgatcaaaaagtct 5960720  T

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Target: chr8; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 284 - 450
Target Start/End: Original strand, 5850299 - 5850461
Alignment:
Q  284 ttagcttaagaacagaataggttgcattaaattatgaaatgaatggagtgagaagagtaacagnnnnnnnggatgatttataagcagatgaaactttgag 383  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||       || |||||||||||||||||||||| |||     
T  5850299 ttagctttagaatagaacaggttgcattaaattatgaaatgaatggattgagaagagtaacagaaaaaaggg-tgatttataagcagatgaaactgtgat 5850397  T
Q  384 tacactgaggtggtcagggggaaaggccatatagttcaataatgagctaccccatattcttcttgtt 450  Q
    ||||||||||||||| || | ||| |||  |||||||| ||| |||||||| |||||||||||||||    
T  5850398 tacactgaggtggtc-ggagaaaaagcc--atagttcagtaaagagctaccacatattcttcttgtt 5850461  T

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Target: chr8; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 5921386 - 5921524
Alignment:
Q  94 taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct 193  Q
    |||||||||||||||| ||||| ||||| || | ||   ||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  5921386 taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctct 5921482  T
Q  194 gttgaccttctccttgttacagcaagagtgatgtcccatgat 235  Q
     || |||||||  ||||| || ||||||||||||||||||||    
T  5921483 tttaaccttctgtttgttgcaacaagagtgatgtcccatgat 5921524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 5984806 - 5984944
Alignment:
Q  94 taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct 193  Q
    |||||||||||||||| ||||| ||||| || | ||   ||||||| ||||| || ||||||||||||||||||||||||||||||||||||| ||||||    
T  5984806 taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtaatatatttgatgagtttttcatcttcttcaggtgaccataatcctct 5984902  T
Q  194 gttgaccttctccttgttacagcaagagtgatgtcccatgat 235  Q
     || |||||||  ||||| || ||||||||||||||||||||    
T  5984903 tttaaccttctgtttgttgcaacaagagtgatgtcccatgat 5984944  T

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Target: chr8; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 5949278 - 5949416
Alignment:
Q  94 taccagcaagttttgggacagagctccagcagcaatcttgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctct 193  Q
    |||||||||||||||| ||||| ||||| || | ||   ||||||| |||||  | ||||||||||||||||||||||||||||||||||||| ||||||    
T  5949278 taccagcaagttttggaacagaactccaacaaccat---gtccatatgttgtactatatttgatgagtttttcatcttcttcaggtgaccataatcctct 5949374  T
Q  194 gttgaccttctccttgttacagcaagagtgatgtcccatgat 235  Q
     || |||||||  ||||| || ||||||||||||||||||||    
T  5949375 tttaaccttctgtttgttgcaacaagagtgatgtcccatgat 5949416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 284 - 378
Target Start/End: Original strand, 5843557 - 5843650
Alignment:
Q  284 ttagcttaagaacagaataggttgcattaaattatgaaatgaatggagtgagaagagtaacagnnnnnnnggatgatttataagcagatgaaact 378  Q
    ||||||| |||| |||| ||||||||||||||||||||||||||||| |||||||||||||||       || ||||||||||||||||||||||    
T  5843557 ttagctttagaatagaacaggttgcattaaattatgaaatgaatggattgagaagagtaacagaaaaaaggg-tgatttataagcagatgaaact 5843650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 462 - 526
Target Start/End: Original strand, 5850507 - 5850571
Alignment:
Q  462 atacttttatatttagctatcttaataatgtttatctagctatcccaatcaagtttctttgcaag 526  Q
    |||||||||||||||| || | |||||||||||||||||||| ||||||||||||| ||||||||    
T  5850507 atacttttatatttagttaacctaataatgtttatctagctaccccaatcaagtttatttgcaag 5850571  T

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Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 537 - 576
Target Start/End: Original strand, 5850588 - 5850627
Alignment:
Q  537 tcacttaattgataaatttattcatcttattttgacactt 576  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  5850588 tcacttaattgataaatttattcttcttattttgacactt 5850627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 334
Target Start/End: Original strand, 5985016 - 5985066
Alignment:
Q  284 ttagcttaagaacagaataggttgcattaaattatgaaatgaatggagtga 334  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||| ||||    
T  5985016 ttagcttaagaatagaatatgttgcattaaattatgaaaagaatggtgtga 5985066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 41351576 - 41351626
Alignment:
Q  154 tgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttct 204  Q
    ||||||||||||||||||||||||| ||||| || ||||| || |||||||    
T  41351576 tgatgagtttttcatcttcttcaggggaccaaagacctctcttaaccttct 41351626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 42789098 - 42789203
Alignment:
Q  132 tgtccataagttgtgatgtatttgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttctccttgttacagcaagagtgatgtccca 231  Q
    ||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||  || || |||||||||||||| ||||    
T  42789098 tgtccataattagtgatgtagttgatgagtttttcatcttcttctggtgaccatagtcctcttttcaccttctgtttattgcagcaagagtgatgcccca 42789197  T
Q  232 tgattg 237  Q
    | ||||    
T  42789198 ttattg 42789203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 204
Target Start/End: Complemental strand, 2590669 - 2590612
Alignment:
Q  147 atgtatttgatgagtttttcatcttcttcaggtgaccatagtcctctgttgaccttct 204  Q
    |||||| | |||||||| |||||||||||||||||||| || ||||| || |||||||    
T  2590669 atgtatctaatgagtttctcatcttcttcaggtgaccaaaggcctctcttaaccttct 2590612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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