View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_high_21 (Length: 257)
Name: NF1123_high_21
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_high_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 26 - 257
Target Start/End: Complemental strand, 12161129 - 12160898
Alignment:
| Q |
26 |
aaaggaaacatttccaaaatattattaaagtttgaaaaactatgagaatgtgatttcaggactataaacatcaacacattagcaccaagatatttaaagc |
125 |
Q |
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| T |
12161129 |
aaaggaaacatttccaaaatattattaaagtttgaaaaactatgagaatgtgatttcaggactataaacatcaacacattagcaccaagatatttaaagc |
12161030 |
T |
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| Q |
126 |
atcatagtaagaaatttaattgtacatagcttgatgaattgtacaaacagatttcgaatgggactttagcgagatgtttaagcgaggaagatgtttatgt |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
12161029 |
atcatagtaagaaatttaattgtacatagcttgatgaattgtacaaacagatttcgaatggggctttagcgagatgtttgagcgaggaagatgtttatgt |
12160930 |
T |
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| Q |
226 |
aaccttggctacatgaaggaatttctggttca |
257 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
12160929 |
aaccttagctacatgaaggaatttctggttca |
12160898 |
T |
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