View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_high_29 (Length: 229)
Name: NF1123_high_29
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 2013592 - 2013449
Alignment:
| Q |
1 |
catgtacaggtaggtaagttcaagtattttcctttagaagtcacaataaacaaaaaagctttacatgatcataagctgtaaactcaacaacaaatttaca |
100 |
Q |
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| T |
2013592 |
catgtataggtaggtaagttcaattattttcttttagaagtcacaataaacaaaaaagctttacatgatcataagctgtaaactaaacaacaaatttcca |
2013493 |
T |
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| Q |
101 |
tggagaaaacaattcatattgcagttgttccaggtgttggatat |
144 |
Q |
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| T |
2013492 |
tggagaaaaaaattcatattgcagttgttccaggtgttggatat |
2013449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 2019371 - 2019298
Alignment:
| Q |
71 |
ataagctgtaaactcaacaacaaatttacatggagaaaacaattcatattgcagttgttccaggtgttggatatg |
145 |
Q |
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| T |
2019371 |
ataagctgtaaact-aataactaattttcatggagaaaacagttcatattgcagttgttccaggtgttggatatg |
2019298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 1962441 - 1962513
Alignment:
| Q |
71 |
ataagctgtaaactcaacaacaaatttacatggagaaaacaattcatattgcagttgttccaggtgttggatat |
144 |
Q |
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| T |
1962441 |
ataagctgtaaact-aagaacaaattttcatggagaaaacagttcatattgcagttgttcctggtgttggatat |
1962513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 2015988 - 2015916
Alignment:
| Q |
71 |
ataagctgtaaactcaacaacaaatttacatggagaaaacaattcatattgcagttgttccaggtgttggatat |
144 |
Q |
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| T |
2015988 |
ataagcggtaaact-aagaacaaatttttatggagaaaacaattcatattgcagttgttccaggtgttggatat |
2015916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 144
Target Start/End: Complemental strand, 2005576 - 2005522
Alignment:
| Q |
90 |
acaaatttacatggagaaaacaattcatattgcagttgttccaggtgttggatat |
144 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2005576 |
acaagtttccatggagaaaacaattcatattgcagttgttccaggtgttggatat |
2005522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 1968060 - 1968113
Alignment:
| Q |
91 |
caaatttacatggagaaaacaattcatattgcagttgttccaggtgttggatat |
144 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1968060 |
caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatat |
1968113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 2008955 - 2008902
Alignment:
| Q |
91 |
caaatttacatggagaaaacaattcatattgcagttgttccaggtgttggatat |
144 |
Q |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2008955 |
caaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatat |
2008902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 1964500 - 1964547
Alignment:
| Q |
93 |
aatttacatggagaaaacaattcatattgcagttgttccaggtgttgg |
140 |
Q |
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| T |
1964500 |
aatttccatggagaaaaccattcacattgcagttgttccaggtgttgg |
1964547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 18189425 - 18189479
Alignment:
| Q |
91 |
caaatttacatggagaaaacaattcatattgcagttgttccaggtgttggatatg |
145 |
Q |
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||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||| |
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| T |
18189425 |
caaatttccatggataaaacaattcacattgcagttgttccaggtgttgggtatg |
18189479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 136
Target Start/End: Original strand, 5901624 - 5901684
Alignment:
| Q |
76 |
ctgtaaactcaacaacaaatttacatggagaaaacaattcatattgcagttgttccaggtg |
136 |
Q |
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| T |
5901624 |
ctgtgaacttaaccacaaattttcatggagaaaacaattcacattgctgttattccaggtg |
5901684 |
T |
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