View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_high_5 (Length: 430)
Name: NF1123_high_5
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 35 - 416
Target Start/End: Original strand, 45861682 - 45862063
Alignment:
| Q |
35 |
ggcaaaggggaattttacacattcatactaatcacaataaatagtacaggctatatgatttttaaatttgtcgatatatattagccactggccagaatta |
134 |
Q |
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| T |
45861682 |
ggcaaaggggaattttacacattcatactaattacaataaatagtacaggctatatgatttttaaatttgtcgatatatattagccactggccagaatta |
45861781 |
T |
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| Q |
135 |
agaaaatctcaactttaacaaacagttgaatcatacactaaatggtttggtttctgaatttaacttaatcaactacattaacagtatttcaaaataatct |
234 |
Q |
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| T |
45861782 |
agaaaatctcaactttaacaaacagttgaatcatacactaaatggtttggtttctgaatttaacttaatcaactacattaacagtatttcaaaataatct |
45861881 |
T |
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| Q |
235 |
ctaaaattttataatgttgactagattcgttcttccttagttatttgcagtaatgattannnnnnncaggaaaatattagaaagtaagtagttgtgttag |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| |
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| T |
45861882 |
ctaaaattttataatgttgactagattcgttcttccttcgttatttgcagtaacgattatttttttcaggaaaatattagaaagtaagtagttgcgttag |
45861981 |
T |
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| Q |
335 |
tttcagaatttgaacatttaatctcctcttaaaaccactttggtgctcctaagctcaccagaacagctacctatatgcaaca |
416 |
Q |
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| T |
45861982 |
tttcagaatttgaacatttaatctcctcttaaaaccactttggtgctcctaagctcaccagaacagctacctatatgcaaca |
45862063 |
T |
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