View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_11 (Length: 388)
Name: NF1123_low_11
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_11 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 10 - 388
Target Start/End: Original strand, 11887168 - 11887549
Alignment:
| Q |
10 |
ccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatg |
109 |
Q |
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| T |
11887168 |
ccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatg |
11887267 |
T |
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| Q |
110 |
cttgttcctgtcattctactgcttcacaatctgtggtgcaaaaatatgtatgatataatta---ctaaatcattagacaaatatgtatataataaattga |
206 |
Q |
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| T |
11887268 |
cttgttcctgtcattctactgcttcacaatctgtggtgcaaaaatatgtatgatataattagtactaaatcattagacaaatatgtatataataaattga |
11887367 |
T |
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| Q |
207 |
aagacaaaatggaacaagagaaagtagcatagttggtacttaagaaagcaattatagtgtcagtggacttgtaattagaaagaaaatattaaccttaaac |
306 |
Q |
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| T |
11887368 |
aagacaaaatggaacaagagaaagtagcatagttggtacttaagaaagcaattatagtgtcagtggacttgtaattagaaagaaaatattaaccttaaac |
11887467 |
T |
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| Q |
307 |
tttaagtttcgagtgtgtgagtgctcagtgtagttaagtcagaatactttgaaagaaacaaagggagcaaacgattggattt |
388 |
Q |
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| T |
11887468 |
tttaagtttcgagtgtgtgagtgctcagtgtagttaagtcagaatactttgaaagaaacaaagggagcaaacgattggattt |
11887549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 11776581 - 11776681
Alignment:
| Q |
10 |
ccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatg |
109 |
Q |
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| T |
11776581 |
ccacagatcatgccccacaagatagtttttcaccaaacagctccagttatcgtagttgtctcttgttagtggttcaagaactattccactagctgcaatg |
11776680 |
T |
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| Q |
110 |
c |
110 |
Q |
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| T |
11776681 |
c |
11776681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 11816573 - 11816676
Alignment:
| Q |
10 |
ccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatg |
109 |
Q |
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| T |
11816573 |
ccacagatcatgccctgcaagatagtttctcaccaaacagctccaattatcgtagttgtcttttgttagtggttcaagaactattccacttgctgcaatg |
11816672 |
T |
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| Q |
110 |
cttg |
113 |
Q |
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|||| |
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| T |
11816673 |
cttg |
11816676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 11841885 - 11841988
Alignment:
| Q |
10 |
ccacagaccatgtcccacaagatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactattccactcgctgcaatg |
109 |
Q |
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||||||| |||| ||| ||||||||||||| |||| |||||||||||| |||||||||||||| || |||||||||||||||||| || | |||| |||| |
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| T |
11841885 |
ccacagatcatgcccctcaagatagtttctcaccaaacagctccagttatcgtagttgtcttttgttagtggttcaagaactattgcatttgctgaaatg |
11841984 |
T |
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| Q |
110 |
cttg |
113 |
Q |
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|||| |
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| T |
11841985 |
cttg |
11841988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 11740035 - 11739970
Alignment:
| Q |
29 |
agatagtttctaaccagacagctccagttttcgtagttgtctttggtcagtggttcaagaactatt |
94 |
Q |
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| T |
11740035 |
agataatttctcaccagacagctccagtaatcatagttgtctttcgtcagtggttcaaaaactatt |
11739970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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