View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_12 (Length: 380)
Name: NF1123_low_12
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 7414208 - 7413864
Alignment:
| Q |
9 |
atcataggtgtcccgggtctgatatttttctcatccaccataactgtgacattgtgagtataccatagatataaggtgtggcgaaagtaatcatactggc |
108 |
Q |
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| T |
7414208 |
atcataggtgtcccgggtttgatatttttctcatccaccataactgtgacattgtgaatataccatagatataaggtgtgacaaaagtaatcatactggc |
7414109 |
T |
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| Q |
109 |
tgaatggtgtgcaaattccatgcttttcccatggtctctgacagaaactatcataagtgccaccaacatctggccaagaagtactaagatctgacttcaa |
208 |
Q |
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| T |
7414108 |
tgaatggtgtgcaaattccatgcttttcccatggtctctgacagaaactatcacaagtgccaccaacatctggccaagaagtactaagatctcacttcaa |
7414009 |
T |
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| Q |
209 |
actataaatctagtaaaaggaatgcaataaaaagccatattct-accatcatgacaacagaaagtcataaaaggagaatttaaataaactcacatatttg |
307 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7414008 |
actataaatctagtaaaaggaatgcaataaaaagtcatattctaaccatgatgacaacagaaagtcataaaatgagaatttaaataaactcacatatttg |
7413909 |
T |
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| Q |
308 |
aaaacatattgcacaaatgtgaaacctgggggttgaggccacact |
352 |
Q |
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| T |
7413908 |
aaaacatattgcacaaatgtgaaacgtgggggttgaggccacact |
7413864 |
T |
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