View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_13 (Length: 379)
Name: NF1123_low_13
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 87 - 313
Target Start/End: Complemental strand, 12571345 - 12571119
Alignment:
| Q |
87 |
gtcaataatatgattgtcttgaattactgcagcacttggcagtgaaatcaatagcggagaaccacgttgcaatagttttctgaggatctgtacacatact |
186 |
Q |
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| T |
12571345 |
gtcaataatatgattgtcttgaattactgcagcacttggcagtgaaatcaatagcggagaaccacgttgcaatagttttctgaggatctgtacacatact |
12571246 |
T |
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| Q |
187 |
ggagctggtattggcctgttaggagaacaaggccttccatgaacatgatttgtggcttctgagctcttatgaatcgctcttgcccattagtgttggtgta |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12571245 |
ggagctggtattggcctgttaggagaacaaggccttccatgaacatgatttgtggcttctgaactcttatgaatcgctcttgcccattagtgttggtgta |
12571146 |
T |
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| Q |
287 |
actgaaataatgcctatgaagaataat |
313 |
Q |
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||||||||||||||||||||||||||| |
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| T |
12571145 |
actgaaataatgcctatgaagaataat |
12571119 |
T |
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