View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_14 (Length: 377)
Name: NF1123_low_14
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 370
Target Start/End: Complemental strand, 35702715 - 35702348
Alignment:
| Q |
7 |
ttagggccatgatcagcagacaaagcagaggcagagttgtttttgtcatcggaatcaagaaatgacacagttgccctccgctttctcgatagactcagtg |
106 |
Q |
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| T |
35702715 |
ttagggccatgatcagctgacaaagcagaggcagagttgtttttgtcatcggaatcaagaaatgacacagtcgccctccgctttcttgaaagactcagtg |
35702616 |
T |
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| Q |
107 |
ttcttcttggactgttcacagaccgaggacttcccattctgatccagggttgcaaatcattcaactttaattaataattataatcatat-attctaaatt |
205 |
Q |
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| T |
35702615 |
ttcttcttggactgttgacagaccgaggactttccattctgatccagggttgcaaatcattcaactttaattaataattataatcatataattctaaatt |
35702516 |
T |
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| Q |
206 |
tacaatgtacaacaaaaaattccatagaaatcaattaacaataacaacaatctccaattttgagaaaat---caacaacaattctcaattttgaagatta |
302 |
Q |
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| T |
35702515 |
tacaatgtacaacaaaaaattccatagaaatcaattaacaataacaacaatctccaattttgagaaaatcaacaacaacaattctcaattttaaagaata |
35702416 |
T |
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| Q |
303 |
ttacaaaatccccaaatcaaaaatttccaaaatcacaaaacattgattcattacctgtgtctgtggtg |
370 |
Q |
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| T |
35702415 |
ttacaaaatccccaaatcaaaaaattccaaaatcacaaaacattgattcattacctgtgtatgtggtg |
35702348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 7955595 - 7955464
Alignment:
| Q |
7 |
ttagggccatgatcagcagacaaagcagaggcagagttgtttttgtcatcggaatcaagaaatgacacagttgccctccgctttctcgatagactcagtg |
106 |
Q |
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| T |
7955595 |
ttagggccatgatcccttgacaaaccagaggcagagttgtttttatcatcggaatcgagaaatgacacagttgccctccgctttctcgatagactcagtg |
7955496 |
T |
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| Q |
107 |
ttcttcttggactgttcacagaccgaggactt |
138 |
Q |
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| T |
7955495 |
ttcttcttggactgttgacagaccgaggactt |
7955464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 7955199 - 7955158
Alignment:
| Q |
242 |
aacaataacaacaatctccaattttgagaaaatcaacaacaa |
283 |
Q |
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|||||||| || |||||||||||||||| ||||||||||||| |
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| T |
7955199 |
aacaataagaaaaatctccaattttgagcaaatcaacaacaa |
7955158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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