View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_15 (Length: 358)
Name: NF1123_low_15
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 1823715 - 1823816
Alignment:
| Q |
182 |
tattttgatagatatgttaaaaaatcattacacttgcnnnnnnngttgaagggatcaatacgaacttggatcctactccatatcttattctcttcatctc |
281 |
Q |
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| T |
1823715 |
tattttgatagatatgttaaaacatctttacacttgtgttttttgttgaagggatcaatatgaacttgcatcctactccatctcttattctcttcttctc |
1823814 |
T |
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| Q |
282 |
ac |
283 |
Q |
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|| |
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| T |
1823815 |
ac |
1823816 |
T |
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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 134
Target Start/End: Original strand, 1823677 - 1823716
Alignment:
| Q |
95 |
aaaatttcccttattgacatataaaattcgtttatgtcta |
134 |
Q |
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| T |
1823677 |
aaaatttcccttattgacatataaaattcgtttatgtcta |
1823716 |
T |
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