View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_17 (Length: 350)
Name: NF1123_low_17
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 96 - 242
Target Start/End: Complemental strand, 11887306 - 11887160
Alignment:
| Q |
96 |
gcaccacagattgtgaagcagtagaatgacaggaacaagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagc |
195 |
Q |
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| T |
11887306 |
gcaccacagattgtgaagcagtagaatgacaggaacaagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagc |
11887207 |
T |
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| Q |
196 |
tgtctggttagaaactatcttgtgggacatggtctgtggggtgttgt |
242 |
Q |
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| T |
11887206 |
tgtctggttagaaactatcttgtgggacatggtctgtggggtgttgt |
11887160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 134 - 244
Target Start/End: Complemental strand, 11776681 - 11776571
Alignment:
| Q |
134 |
gcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtctgtg |
233 |
Q |
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| T |
11776681 |
gcattgcagctagtggaatagttcttgaaccactaacaagagacaactacgataactggagctgtttggtgaaaaactatcttgtggggcatgatctgtg |
11776582 |
T |
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| Q |
234 |
gggtgttgttg |
244 |
Q |
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||| ||||||| |
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| T |
11776581 |
gggcgttgttg |
11776571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 11816676 - 11816565
Alignment:
| Q |
131 |
caagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtct |
230 |
Q |
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| T |
11816676 |
caagcattgcagcaagtggaatagttcttgaaccactaacaaaagacaactacgataattggagctgtttggtgagaaactatcttgcagggcatgatct |
11816577 |
T |
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| Q |
231 |
gtggggtgttgt |
242 |
Q |
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| T |
11816576 |
gtggggagttgt |
11816565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 11841988 - 11841877
Alignment:
| Q |
131 |
caagcattgcagcgagtggaatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatcttgtgggacatggtct |
230 |
Q |
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|||||||| |||| | || |||||||||||||||||| || |||||||||||||| |||||||||||| |||| ||||||||||||| ||| |||| ||| |
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| T |
11841988 |
caagcatttcagcaaatgcaatagttcttgaaccactaacaaaagacaactacgataactggagctgtttggtgagaaactatcttgaggggcatgatct |
11841889 |
T |
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| Q |
231 |
gtggggtgttgt |
242 |
Q |
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|||||| ||||| |
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| T |
11841888 |
gtggggagttgt |
11841877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 11739970 - 11740035
Alignment:
| Q |
150 |
aatagttcttgaaccactgaccaaagacaactacgaaaactggagctgtctggttagaaactatct |
215 |
Q |
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||||||| ||||||||||||| ||||||||||| || |||||||||||||||| ||||| ||||| |
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| T |
11739970 |
aatagtttttgaaccactgacgaaagacaactatgattactggagctgtctggtgagaaattatct |
11740035 |
T |
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