View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_19 (Length: 336)
Name: NF1123_low_19
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_19 |
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| [»] scaffold0064 (2 HSPs) |
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| [»] scaffold0116 (3 HSPs) |
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Alignment Details
Target: scaffold0064 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 28 - 336
Target Start/End: Original strand, 22016 - 22326
Alignment:
| Q |
28 |
tgcttttgatttgagttccccacaatattgtttgaaagggattggcacatctggtgtgttatttacttcgtctgccaactcaattgactttgccaatttt |
127 |
Q |
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| T |
22016 |
tgcttttgatttgagttccccacaatattgtttgaaagggattggcacatctggtgtgttatttacttcgtctgccagctcaattgactttgccaatttt |
22115 |
T |
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| Q |
128 |
tgcttcagattgtcacccattgatagttagtttggttttgaggtcttaaagggatagcttaggagatgattggcaacagaaacagtttctcaagccaaac |
227 |
Q |
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| T |
22116 |
tgcttcagattgtcacccattgatagttagtttggttttgaggtcttaaagggatagcttaggagatgattggcaacagaaacagtttctcaagtcaaac |
22215 |
T |
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| Q |
228 |
gaatcaaaagagctttctaattagaaatgaatggtctcacac--acacactaaagtggatgggattgatttaccaagtcaaacgtgatttctagttctat |
325 |
Q |
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| T |
22216 |
gaatcaaaagagctttctagttagaaatgaatggacacacacatacacactaaagtggatggcattgatttaccaagtcaaacgtgctttctagttctat |
22315 |
T |
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| Q |
326 |
ctatctaactt |
336 |
Q |
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| T |
22316 |
ctatctaactt |
22326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 4815 - 4970
Alignment:
| Q |
38 |
ttgagttccccacaatattgtttgaaagggattggcacatctggtgtgttatttacttcgtctgccaactcaattgactttgccaatttttgcttcagat |
137 |
Q |
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| T |
4815 |
ttgagctccccgcattcttgtttgaatgagatttgctcgtttggtgtgctagttactttgtctgccagctcaattgactttgccaatttttgcttaagat |
4914 |
T |
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| Q |
138 |
tgtcacccattgatagttagtttggttttgaggtcttaaagggatagcttaggagatga |
196 |
Q |
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| T |
4915 |
tgtcacccatcga---ttagtttggtttcgaggtgctagagggagagcttagaagatga |
4970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 11006 - 11081
Alignment:
| Q |
29 |
gcttttgatttgagttccccacaatattgtttgaaagggattggcacatctggtgtgttatttacttcgtctgcca |
104 |
Q |
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| T |
11006 |
gcttttgatttgagttccccacaatattgtttggacgggattggctcatctggtgtgttatttacttcgtctgcca |
11081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 182 - 304
Target Start/End: Original strand, 11114 - 11234
Alignment:
| Q |
182 |
tagcttaggagatgattggcaacagaaacagtttctcaagccaaacgaatcaaaagagctttctaattagaaatgaatggtctcacacacacactaaagt |
281 |
Q |
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||||||||||||||||||||| |||| | ||||||||| | ||||||||||||| || ||||||| |||||||||||||| ||||||||||| || ||| |
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| T |
11114 |
tagcttaggagatgattggcatcagatatagtttctcaggtcaaacgaatcaaaggatctttctagttagaaatgaatgg--tcacacacacattagagt |
11211 |
T |
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| Q |
282 |
ggatgggattgatttaccaagtc |
304 |
Q |
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| T |
11212 |
agaaggaattgatttaccaagtc |
11234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 11083 - 11116
Alignment:
| Q |
124 |
tttttgcttcagattgtcacccattgatagttag |
157 |
Q |
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| T |
11083 |
tttttgcttcagattgtcacccattgatagttag |
11116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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