View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_2 (Length: 584)
Name: NF1123_low_2
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 29 - 533
Target Start/End: Original strand, 10088266 - 10088766
Alignment:
| Q |
29 |
actttgtacatatttagtacttcctaacaaaatttaaggatggaaatagcaaggtttgactaaattttactcgggataataatatattttatggaaactc |
128 |
Q |
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|||||||||||| || ||||| | ||| | |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
10088266 |
actttgtacatacttggtactccataatataatttaaggatgaaaatagtaaggtttgactaaattttactcg--ataataatatattgtatggaaactc |
10088363 |
T |
|
| Q |
129 |
attttattttctcctctatttttgtatcttcatactttgcacatatcaaccaagtgagccctcgtggtttcctttcaataaggggttttggaactgatgc |
228 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10088364 |
--tttattttatcctctatttttgtatcttcatactttgcacatatcaaccaagtgagccctcgtggtttcctttcaataaggggttttggaactgatgc |
10088461 |
T |
|
| Q |
229 |
ttattcatcatgaagttgttgtgcaactttgatgtattttagatgacaatttacaaatgagaatattgtgttccatcagtgtcgttaactgtgggtagcg |
328 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10088462 |
ttgatcatcatgaagttgttgtgcaactttgatgtattttagatgacaatttacaaatgagaatattgtgttccatcagtgtcgttaactgtgggtagcg |
10088561 |
T |
|
| Q |
329 |
gaaaatagcagtttgttcaaattacactgcgcagcagtcttatagtgccattatagccgctactatttgacaatattttctacataaattaaatactgta |
428 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
10088562 |
gaaaatagcggtttgttcaaattacactgcgcagcagtcttatagtgccattatagccgatgctatttgacaatattttctacataaattaaatactgta |
10088661 |
T |
|
| Q |
429 |
ttgcggaacaatagcgatttgtttaaattctgctacaccatagcgctatagcactgtgatccatgtattcttgtttggtacattttggactatggaaaag |
528 |
Q |
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| T |
10088662 |
ttgcggaacaatagcgatttgtttaaattctgctacgccatagcgttatagcactgtgatccatttattcttgtttggtacattttggactatggaaaag |
10088761 |
T |
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| Q |
529 |
tgcaa |
533 |
Q |
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||||| |
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| T |
10088762 |
tgcaa |
10088766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 480
Target Start/End: Original strand, 55469965 - 55470013
Alignment:
| Q |
432 |
cggaacaatagcgatttgtttaaattctgctacaccatagcgctatagc |
480 |
Q |
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| T |
55469965 |
cggaacaatagcggtttgtttaaattccgctacactatagcggtatagc |
55470013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 482
Target Start/End: Complemental strand, 27743176 - 27743125
Alignment:
| Q |
431 |
gcggaacaatagcgatttgtttaaattctgctacaccatagcgctatagcac |
482 |
Q |
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| T |
27743176 |
gcggaacaatagcaatttgttaaaattctgacacacgatagcgctatagcac |
27743125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Complemental strand, 7108314 - 7108269
Alignment:
| Q |
306 |
agtgtcgttaactgtgggtagcggaaaatagcagtttgttcaaatt |
351 |
Q |
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| T |
7108314 |
agtgttgttaatcgtggatagcggaaaatagcagtttgttcaaatt |
7108269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 479
Target Start/End: Complemental strand, 42581908 - 42581863
Alignment:
| Q |
434 |
gaacaatagcgatttgtttaaattctgctacaccatagcgctatag |
479 |
Q |
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| T |
42581908 |
gaacaagagcgatttgttggaattctgctacatcatagcgctatag |
42581863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 464
Target Start/End: Complemental strand, 21891050 - 21891005
Alignment:
| Q |
419 |
aaatactgtattgcggaacaatagcgatttgtttaaattctgctac |
464 |
Q |
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| T |
21891050 |
aaatattgtattgtggaacaatagcaatttgttgaaattctgctac |
21891005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 32427143 - 32427188
Alignment:
| Q |
427 |
tattgcggaacaatagcgatttgtttaaattctgctacaccatagc |
472 |
Q |
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| T |
32427143 |
tattgcggaacaataatggtttgttcaaattctgctacaccatagc |
32427188 |
T |
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