View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_20 (Length: 331)
Name: NF1123_low_20
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_20 |
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| [»] scaffold0096 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 6 - 320
Target Start/End: Complemental strand, 7896353 - 7896036
Alignment:
| Q |
6 |
acttgcgcaaacaaggagatttcccacacaacttgctgttgatgttggagaagccatggggctgtttcatgccattcaatggttaacagacatgaaattt |
105 |
Q |
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| T |
7896353 |
acttgcgcaaacaaggagatttcccacacaacttgctgttgatgttggagaagccatggggctgtttcatgccattcaatggttaacagacatgaaattt |
7896254 |
T |
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| Q |
106 |
gataatgtggactttgtgaccgattccaaagtaacagcagaagctttcaattcaccacgaaacgatgtaatggagtttggtacataattacggcatgtcg |
205 |
Q |
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| T |
7896253 |
gataatgtggactttgtgaccgattccaaagtaacagcagaagctttcaattcaccacgaaacgacgtaacggagtttggtacataattacggcatgtcg |
7896154 |
T |
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| Q |
206 |
gaacc---tgttctcacattttgcaaactcaagggtagagtttagtcggcgagaagcgaatgtgacagctcatattcttgcgggcgaggccatattctca |
302 |
Q |
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| T |
7896153 |
gaacctgttgttctcacattttgcaaactcaagggtagagtttagtcggcgagaagcgaatgtgacagctcatattcttgcggacgaggccatattctca |
7896054 |
T |
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| Q |
303 |
gctagtcccataattcat |
320 |
Q |
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| T |
7896053 |
gctagtcccataattcat |
7896036 |
T |
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Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 221 - 320
Target Start/End: Original strand, 21098034 - 21098133
Alignment:
| Q |
221 |
ttttgcaaactcaagggtagagtttagtcggcgagaagcgaatgtgacagctcatattcttgcgggcgaggccatattctcagctagtcccataattcat |
320 |
Q |
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| T |
21098034 |
ttttgcaaactcaagggtagagtttagtcggcgacaagcgaatgtggcagttcatattcttgcgagcgatgccatattctcaactagtcccataattcat |
21098133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 46884829 - 46884780
Alignment:
| Q |
226 |
caaactcaagggtagagtttagtcggcgagaagcgaatgtgacagctcat |
275 |
Q |
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| T |
46884829 |
caaactccagggtagagtttaatcggcgacaagccaatgtgatagctcat |
46884780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 221 - 306
Target Start/End: Complemental strand, 43118 - 43033
Alignment:
| Q |
221 |
ttttgcaaactcaagggtagagtttagtcggcgagaagcgaatgtgacagctcatattcttgcgggcgaggccatattctcagcta |
306 |
Q |
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| T |
43118 |
ttttgcaaactcaaaggtagagtttagtcggcgacaagcgaatgtgacaactcatattcttgtgggcgaggccatattctcagcta |
43033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 103 - 142
Target Start/End: Original strand, 8565885 - 8565924
Alignment:
| Q |
103 |
tttgataatgtggactttgtgaccgattccaaagtaacag |
142 |
Q |
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| T |
8565885 |
tttgataatgtggactttgtgtctgattccaaagtaacag |
8565924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 142
Target Start/End: Complemental strand, 8119067 - 8119029
Alignment:
| Q |
104 |
ttgataatgtggactttgtgaccgattccaaagtaacag |
142 |
Q |
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| T |
8119067 |
ttgataatgtggattttgtgactgattccaaagtaacag |
8119029 |
T |
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