View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1123_low_23 (Length: 315)

Name: NF1123_low_23
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1123_low_23
NF1123_low_23
[»] chr8 (1 HSPs)
chr8 (94-315)||(11486904-11487125)
[»] chr3 (21 HSPs)
chr3 (94-291)||(10432047-10432244)
chr3 (94-309)||(10197542-10197757)
chr3 (93-312)||(10079278-10079497)
chr3 (94-309)||(10361786-10362001)
chr3 (93-312)||(10186248-10186467)
chr3 (94-309)||(10262567-10262782)
chr3 (94-276)||(10665395-10665577)
chr3 (94-315)||(11771103-11771324)
chr3 (94-315)||(11779961-11780182)
chr3 (94-309)||(10090659-10090875)
chr3 (94-176)||(10502452-10502534)
chr3 (94-309)||(10582479-10582694)
chr3 (94-312)||(10530516-10530734)
chr3 (94-315)||(10373824-10374045)
chr3 (94-312)||(10679307-10679525)
chr3 (94-315)||(10033869-10034090)
chr3 (94-315)||(10519354-10519575)
chr3 (232-315)||(9840865-9840948)
chr3 (232-315)||(10128932-10129015)
chr3 (94-178)||(9840730-9840814)
chr3 (94-315)||(9851608-9851829)
[»] chr2 (1 HSPs)
chr2 (96-315)||(26908759-26908978)
[»] chr4 (1 HSPs)
chr4 (94-178)||(17851042-17851126)
[»] scaffold0083 (1 HSPs)
scaffold0083 (232-315)||(55581-55664)


Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 94 - 315
Target Start/End: Original strand, 11486904 - 11487125
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  11486904 tcttccttccaaccattttcatcccttgaatgtataacatttgtcaacatgcaaaattggaaggaatggcttccttttgaaggcaaatttttttcttttc 11487003  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11487004 ctcgtcttagaactcttgagttacatagttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattaatataacaggttgtgc 11487103  T
Q  294 ccatcttttggaaacaccatct 315  Q
    ||||||||||||||||||||||    
T  11487104 ccatcttttggaaacaccatct 11487125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 94 - 291
Target Start/End: Complemental strand, 10432244 - 10432047
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||| ||||||| ||||||||||  |||||| ||| | |||||||| ||||||||| |||||||| || |||||||||| |       ||||||    
T  10432244 tcttccttcctaccatttccatcccttgagcgtataaaattcgacaacatgccaaattggaatgaatggctgccctttgaaggcataaaagttgcttttc 10432145  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgt 291  Q
    |||| ||||||  | |||||||||||  ||||| ||| ||||||||||| ||||||||| ||||||||||||||||| ||||| ||||| ||||||||    
T  10432144 ctcgacttagagttatggagttacataattgtcctgaactaaggggacaattgcctagcaaccttccttgcatagaagaaattgatatatcaggttgt 10432047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 94 - 309
Target Start/End: Original strand, 10197542 - 10197757
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    ||||||||||| |||||| || |||||||  |||||| ||| | |||||||| ||||||||| ||||||||||| | |||||||| |       ||||||    
T  10197542 tcttccttccagccatttccaacccttgagcgtataaaattcgacaacatgccaaattggaatgaatggcttccctatgaaggcataaaatttgcttttc 10197641  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |||| |||||| || ||||||||| |  |||||  || ||||||||||||||||||||| |||||||||||||| || |||||   |||| ||||||| |    
T  10197642 ctcgacttagagctatggagttacgtaattgtcgagaactaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgttc 10197741  T
Q  294 ccatcttttggaaaca 309  Q
     ||||| |||||||||    
T  10197742 tcatctattggaaaca 10197757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 312
Target Start/End: Original strand, 10079278 - 10079497
Alignment:
Q  93 atcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnnctttt 192  Q
    ||||| ||||||||||||| ||||||||||  | |||| ||||  |||||||| |||||||||  |||||||||| |||||||| | |        ||||    
T  10079278 atctttcttccaaccatttccatcccttgagcgcataaaatttaacaacatgccaaattggaatcaatggcttccctttgaaggaataaattttgttttt 10079377  T
Q  193 cctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtg 292  Q
    ||||| ||||||||| |||||||| ||  ||||| ||| |||| ||| ||||| |||||| ||||||||||||||||| |||||   |||| ||||||||    
T  10079378 cctcgacttagaactatggagttagatgattgtcctgaactaaaggggcattttcctagcgaccttccttgcatagaagaaattatgataaaaggttgtg 10079477  T
Q  293 cccatcttttggaaacacca 312  Q
    |  |||| ||||||||||||    
T  10079478 cgaatctattggaaacacca 10079497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 309
Target Start/End: Complemental strand, 10362001 - 10361786
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||||||||||| ||||||||||  | ||||  || | |||||||| ||||||||| |||||| |||| |||||||||| |       ||||||    
T  10362001 tcttccttccaaccatttccatcccttgagcgcataaatttcgacaacatgccaaattggaatgaatggattccctttgaaggcataaaatgtgcttttc 10361902  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |||  |||||| || |||||||||||  |||||  || ||||||||||||||||| ||| ||||||||||||||||| |||||   |||  ||||||| |    
T  10361901 ctcaacttagagctatggagttacataattgtccagaactaaggggacatttgccgagcaaccttccttgcatagaagaaattgtaatacaaggttgttc 10361802  T
Q  294 ccatcttttggaaaca 309  Q
     ||||| |||||||||    
T  10361801 tcatctattggaaaca 10361786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 93 - 312
Target Start/End: Original strand, 10186248 - 10186467
Alignment:
Q  93 atcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnnctttt 192  Q
    ||||| ||||||||||||| ||||||||||  | |||| ||||  |||||||| |||||||||  |||||||||| |||||||| | |        ||||    
T  10186248 atctttcttccaaccatttccatcccttgagcgcataaaatttaacaacatgccaaattggaatcaatggcttccctttgaaggaataaattttgttttt 10186347  T
Q  193 cctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtg 292  Q
    ||||| ||||||||| |||||||| ||  ||||| ||| |||| ||| |||||||||||  ||||||||||||||||| |||||   |||| ||||||||    
T  10186348 cctcgacttagaactatggagttagatgattgtcctgaactaaaggggcatttgcctagtgaccttccttgcatagaagaaattatgataaaaggttgtg 10186447  T
Q  293 cccatcttttggaaacacca 312  Q
    |  |||| ||||| ||||||    
T  10186448 cgaatctattggatacacca 10186467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 94 - 309
Target Start/End: Original strand, 10262567 - 10262782
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    ||||||||||||||||||  |||||||||  |||||| |||   || | ||| ||||||||| ||||||||||| | |||||||| |       ||||||    
T  10262567 tcttccttccaaccatttcaatcccttgagcgtataaaattcaacagcttgccaaattggaatgaatggcttccctatgaaggcataaaactttcttttc 10262666  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |||| |||||| || |||||||||||  |||||  || ||||||| ||||||||||||| | ||||||||||||||| |||||   |||| ||||||| |    
T  10262667 ctcgacttagagctatggagttacataattgtccagaactaagggaacatttgcctagcaaacttccttgcatagaagaaattgtaataaaaggttgttc 10262766  T
Q  294 ccatcttttggaaaca 309  Q
     ||||| |||||||||    
T  10262767 tcatctattggaaaca 10262782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 94 - 276
Target Start/End: Original strand, 10665395 - 10665577
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||||||||||| |||||||||| ||||||| ||| | |||||| | ||||||||| |||||| |||| |||||||||| |       ||||||    
T  10665395 tcttccttccaaccatttccatcccttgagtgtataaaattcgacaacataccaaattggaatgaatggattccctttgaaggcataaaatttgcttttc 10665494  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaatt 276  Q
    |||| |||||| |  ||||||||| |  |||||   | |||| |||||||||||||||||| |||||||| |||||| |||||    
T  10665495 ctcgacttagagccatggagttacgtaattgtccaaaactaaagggacatttgcctagccatcttccttgtatagaagaaatt 10665577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 94 - 315
Target Start/End: Original strand, 11771103 - 11771324
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||||||||||| ||||||| ||   ||||| ||||| |||||||| ||||||||| |||||||||||||||||||| | |       ||||||    
T  11771103 tcttccttccaaccatttccatccctcgagcttataaaatttgacaacatgccaaattggaatgaatggcttccttttgaaggtataaaatttgcttttc 11771202  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |||| || | |||| ||||||| | |  ||||| ||| ||||||| |||||| |||| | ||||||||||||| ||| |||||   || | ||||||| |    
T  11771203 ctcgactcaaaactatggagttgcgtaattgtcctgaactaagggtacattttcctaccaaccttccttgcatcgaagaaattgtaatcaaaggttgttc 11771302  T
Q  294 ccatcttttggaaacaccatct 315  Q
     ||||| ||||||| |||||||    
T  11771303 tcatctattggaaaaaccatct 11771324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 94 - 315
Target Start/End: Complemental strand, 11780182 - 11779961
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||||||||||| ||||||| ||   ||||| ||||| |||||||| ||||||||| |||||| |||| |||||||| | |       | ||||    
T  11780182 tcttccttccaaccatttccatccctcgagcttataaaatttgacaacatgccaaattggaatgaatggtttccctttgaaggtataaaatttgcatttc 11780083  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |||| || | |||| ||||||| | |  ||||| ||| ||||||||||||||||||| | ||||||||||||| ||| |||||   |||| ||||||| |    
T  11780082 ctcgactcaaaactatggagttgcgtaattgtcctgaactaaggggacatttgcctaccaaccttccttgcatcgaagaaattgtaataaaaggttgttc 11779983  T
Q  294 ccatcttttggaaacaccatct 315  Q
     ||||| ||||||| |||||||    
T  11779982 tcatctattggaaaaaccatct 11779961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 309
Target Start/End: Original strand, 10090659 - 10090875
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    ||||||||||| |||||| || |||||||  |||||| ||| | |||||||| ||||||||| ||||||||||| | |||||||| |       ||||||    
T  10090659 tcttccttccagccatttccaacccttgagcgtataaaattcgacaacatgccaaattggaatgaatggcttccctatgaaggcataaaatttgcttttc 10090758  T
Q  194 ctcgtcttagaactctggagtt-acatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtg 292  Q
    |||| |||||| || ||||||  || |  |||||  || ||||||||||||||||||||| |||||||||||||| || |||||   |||| |||||||     
T  10090759 ctcgacttagagctatggagtacacgtaattgtcgagaactaaggggacatttgcctagcaaccttccttgcataaaagaaattgtaataaaaggttgtt 10090858  T
Q  293 cccatcttttggaaaca 309  Q
    | ||||| |||||||||    
T  10090859 ctcatctattggaaaca 10090875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 10502452 - 10502534
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaagg 176  Q
    |||||||||||||||||| | |||||||| ||||||||||||  |||||||| ||||||||||||||||||| | ||||||||    
T  10502452 tcttccttccaaccatttccctcccttgagtgtataacatttttcaacatgccaaattggaaggaatggctttcctttgaagg 10502534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 309
Target Start/End: Original strand, 10582479 - 10582694
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||||||||||| |||||||||| | ||||| ||| | ||| || | |||||||||  |||||||||| |||||||||| |       ||||||    
T  10582479 tcttccttccaaccatttccatcccttgagtatataaaattcgacaatataccaaattggaataaatggcttccctttgaaggcatacaatttgcttttc 10582578  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |||  ||| || || || |||||| |  |||||   | |||| |||||||||||||||||| ||||||||||||||| ||||| | |||  ||||||||     
T  10582579 ctcaacttcgagctatgaagttacgtaattgtcccaaactaaagggacatttgcctagccatcttccttgcatagaagaaattgaaatagaaggttgtgt 10582678  T
Q  294 ccatcttttggaaaca 309  Q
     ||||| |||||||||    
T  10582679 tcatctattggaaaca 10582694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 312
Target Start/End: Original strand, 10530516 - 10530734
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||||||||||| | ||||||||  |||||| ||||   | ||||| ||||||||| |||||||| ||||||||||| ||        ||||||    
T  10530516 tcttccttccaaccatttccgtcccttgagcgtataagatttcaaatcatgccaaattggaatgaatggctcccttttgaaggaaacagctttgcttttc 10530615  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |  |||||| |||||| |||||| ||  |||||  ||  | ||||||||||| |||||||||||  ||| ||||||| ||||||| |||  |||||||||    
T  10530616 catgtcttaaaactcttgagttatataattgtccagaatttaggggacattttcctagccacctatcttccatagaagaaattcaaatagaaggttgtgc 10530715  T
Q  294 ccatcttttggaaacacca 312  Q
     | ||| ||||||||||||    
T  10530716 tcgtctattggaaacacca 10530734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 315
Target Start/End: Complemental strand, 10374045 - 10373824
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||||||||||  ||||||||||  ||||||  || | ||||||||  |||||||| |||||| |||| |||||||||| |       ||||||    
T  10374045 tcttccttccaaccattcccatcccttgagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttc 10373946  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |||| ||||   || | ||||||| |  |||||  || ||||||||||||||||| | | ||||||||| ||||||| |||||   ||| |||||||| |    
T  10373945 ctcgacttaaggctatagagttacgtaattgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttc 10373846  T
Q  294 ccatcttttggaaacaccatct 315  Q
     ||||| |||||||||||||||    
T  10373845 tcatctattggaaacaccatct 10373824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 312
Target Start/End: Original strand, 10679307 - 10679525
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||||||||||| | |||||||| ||||||| ||||   | ||||| ||||||||| |||||||| ||||||||||| ||        ||||||    
T  10679307 tcttccttccaaccatttccgtcccttgagtgtataagatttcaaatcatgccaaattggaatgaatggctcccttttgaaggaaacagctttgcttttc 10679406  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |  |||||| |||||| |||||| ||  |||||  || || ||| ||||||| || ||||||||  ||| ||||||| ||||||| |||  ||||| |||    
T  10679407 catgtcttaaaactcttgagttatataattgtccagaacttaggcgacattttcccagccacctatcttccatagaagaaattcaaatagaaggttatgc 10679506  T
Q  294 ccatcttttggaaacacca 312  Q
     | ||| ||||||||||||    
T  10679507 tcgtctattggaaacacca 10679525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 315
Target Start/End: Original strand, 10033869 - 10034090
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||||||||||   |||||||||  ||||||  || | |||||||   |||||||| |||||| |||| |||||||||| |       ||||||    
T  10033869 tcttccttccaaccattccgatcccttgagcgtataaagttcgacaacatggtcaattggaatgaatggattccctttgaaggcataaaatgtgcttttc 10033968  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |||| ||||   || | |||||| ||  |||||  || ||||||||||||||||| | | ||||||||| |||||||||||||   ||| |||||||| |    
T  10033969 ctcgacttaaggctatagagttatataattgtccagaactaaggggacatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttc 10034068  T
Q  294 ccatcttttggaaacaccatct 315  Q
     ||||| |||||||||||||||    
T  10034069 tcatctattggaaacaccatct 10034090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 315
Target Start/End: Original strand, 10519354 - 10519575
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||||||||||  ||||||||||  ||||||  || | ||||||||  |||||||| |||||| |||| || ||||||| |       ||||||    
T  10519354 tcttccttccaaccattcccatcccttgagcgtataatgttcgacaacatgctcaattggaatgaatggattcccttcgaaggcataaaatttgcttttc 10519453  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |||  ||||   || |  |||||| |  |||||  || ||||||||||||||||| | | ||||||||| ||||||| |||||   |||| ||||||||     
T  10519454 ctcaacttaaggctataaagttacgtaattgtccagaactaaggggacatttgcccaccaaccttccttccatagaagaaattgtaataaaaggttgtgt 10519553  T
Q  294 ccatcttttggaaacaccatct 315  Q
     ||||| |||||||||||||||    
T  10519554 tcatctattggaaacaccatct 10519575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 315
Target Start/End: Original strand, 9840865 - 9840948
Alignment:
Q  232 ctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatct 315  Q
    ||||||||| ||||||| | | ||||||||| |||||||||||||   ||| |||||||| | ||||| |||||||||||||||    
T  9840865 ctaaggggatatttgcccaccaaccttccttccatagaaaaaattgtaatatcaggttgttctcatctattggaaacaccatct 9840948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 315
Target Start/End: Original strand, 10128932 - 10129015
Alignment:
Q  232 ctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatct 315  Q
    ||||||||||||||||| | | ||||||||| ||||||| |||||   ||| |||||||| | ||||| |||||||||||||||    
T  10128932 ctaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatct 10129015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 9840730 - 9840814
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggca 178  Q
    |||||||||||||||||  ||||||||||  ||||||  || | ||||||||  |||||||| |||||| |||| ||||||||||    
T  9840730 tcttccttccaaccattcccatcccttgagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggca 9840814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 315
Target Start/End: Original strand, 9851608 - 9851829
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttc 193  Q
    |||||||||||||||||  ||||||||||  ||||||  || | ||||||||  |||||||| |||||| |||| |||||||||| |       ||||||    
T  9851608 tcttccttccaaccattcccatcccttgagcgtataaagttcgacaacatgctcaattggaatgaatggattccctttgaaggcataaaatttgcttttc 9851707  T
Q  194 ctcgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgc 293  Q
    |||  ||||   |  | ||||||| |  |||||   | ||||||||| ||||||| | | ||||||||| ||||||| |||||   ||| |||||||| |    
T  9851708 ctcaacttaaggcaatagagttacgtgattgtccaaaactaaggggatatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttc 9851807  T
Q  294 ccatcttttggaaacaccatct 315  Q
     ||||| |||||||||||||||    
T  9851808 tcatctattggaaacaccatct 9851829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 315
Target Start/End: Original strand, 26908759 - 26908978
Alignment:
Q  96 ttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggcaaannnnnnncttttcct 195  Q
    ||||||||||||||||  |||||||||  |||||| ||||  |||||||| |||||||||  |||||||||| |||||||| |         ||||||||    
T  26908759 ttccttccaaccatttcaatcccttgagcgtataaaatttaacaacatgccaaattggaatcaatggcttccctttgaaggaatgaatttttcttttcct 26908858  T
Q  196 cgtcttagaactctggagttacatcgttgtcatgagctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgccc 295  Q
    || || |||||| | ||||| |||  |||||   | ||||  |||| |||||||||| ||||||||||||||||| |||||   |||| ||||||    |    
T  26908859 cgactcagaactattgagttgcataattgtccaaaactaaaaggacttttgcctagcaaccttccttgcatagaagaaattgtaataaaaggttgctatc 26908958  T
Q  296 atcttttggaaacaccatct 315  Q
    |||| |||||||||||||||    
T  26908959 atctattggaaacaccatct 26908978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 178
Target Start/End: Complemental strand, 17851126 - 17851042
Alignment:
Q  94 tcttccttccaaccattttcatcccttgaatgtataacatttgccaacatgcaaaattggaaggaatggcttccttttgaaggca 178  Q
    |||||||| ||||||||| | |||||||| ||| |||  |||  |||||||| ||||||||||||||||||||| |||| |||||    
T  17851126 tcttcctttcaaccatttccgtcccttgagtgtttaatgtttcgcaacatgccaaattggaaggaatggcttccctttgtaggca 17851042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 315
Target Start/End: Complemental strand, 55664 - 55581
Alignment:
Q  232 ctaaggggacatttgcctagccaccttccttgcatagaaaaaattcatataacaggttgtgcccatcttttggaaacaccatct 315  Q
    ||||||||||||||||| | | ||||||||| ||||||| |||||   ||| |||||||| | ||||| |||||||||||||||    
T  55664 ctaaggggacatttgcccaccaaccttccttccatagaagaaattgtaatatcaggttgttctcatctattggaaacaccatct 55581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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