View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_29 (Length: 281)
Name: NF1123_low_29
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 60 - 241
Target Start/End: Complemental strand, 3862769 - 3862588
Alignment:
| Q |
60 |
ccacatgcttctatacggtagtttcatatgggacaaagttatctatttacttctatccagctagaacctgcttctttcctaacccttttcttactcatga |
159 |
Q |
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| T |
3862769 |
ccacatgcttctatacggtaatttcatatgggacaaagttatctatttacttctatccagctagaacctgcttctttcctaacccttttcttactcatga |
3862670 |
T |
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| Q |
160 |
gactcctaattacattaacatcttcccatcttccaaaagatgcatacatattagacaacatcacatagacataatcttcatc |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3862669 |
gactcctaattacattaacatcttcccatcttccaaaagatgcatacatattagacaacatcacatagacataatcttcatc |
3862588 |
T |
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