View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_3 (Length: 522)
Name: NF1123_low_3
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 3 - 489
Target Start/End: Original strand, 11247775 - 11248273
Alignment:
| Q |
3 |
catctccaataatattcatcatcaagcccatgaaagactgactttcaaagttgtcgccattattcatcggcattgcagcatggccaggacccatcattgc |
102 |
Q |
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| T |
11247775 |
catctccattaccattcatcatcaagcccatcaaaagttgactttcaatgatttcaccattattcacagtcatcccagcatggccatgacccatccttgc |
11247874 |
T |
|
| Q |
103 |
catttcttcactactgaatgtaaatagtggtggtatttg------------acgttgaccattattatcctctgcttccaaccttctaccaacctcctcc |
190 |
Q |
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| T |
11247875 |
catttcttcgttcctggatgtcaatggtggtgccatttggaattgaatttcatgttgaccattattatcctcttctcccaaccttctaccaacctccttc |
11247974 |
T |
|
| Q |
191 |
aatttgtggtcaatcaacgaacgaagatgttttgaatcaaccaatgacatattattatgcatcaattcactttgaaaaagatattgattcatgagcattg |
290 |
Q |
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||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| | ||||| || | || || | ||||||||||| ||| ||||||| |
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| T |
11247975 |
aatttctggtcaatcaaccaacaaagatgttttgaatcaaccaatgacatattactctgcataaagttaccttcataaagatattgaaacatcagcattg |
11248074 |
T |
|
| Q |
291 |
tcatctccatctccttgttatcatgcctttgtatcttcagtttctctttagcctttagaaccctttctttcatgtaagtctcttgatcaaccgttttgtt |
390 |
Q |
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| T |
11248075 |
ccatctctttctctttgttgtcatgcctttgcatcttcagtttctctttggcctttagaaccctttctttcatatatgtttcttgattcaccattttctt |
11248174 |
T |
|
| Q |
391 |
gctcttctcccccacattcattgttctgaattttgagagcactgtttcgactccctgtggtgacggccatatctctggttgaggctcgtagggtccata |
489 |
Q |
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| T |
11248175 |
gctcttatccctttcagtcattgttctgaattttgagagcactgtttgaactccttgtgatgatggccatatcttaggttgaggctcgtatggtccata |
11248273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 168 - 489
Target Start/End: Original strand, 9894890 - 9895212
Alignment:
| Q |
168 |
ccaaccttctaccaacctcctccaatttgtggtcaatcaacgaacgaagatgttttgaatcaaccaatgacatattattatgcatcaattcactttgaaa |
267 |
Q |
| |
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|||||||||||| ||| |||| | |||| |||||||||||| ||| ||||||||||||||||||||| || |||||||| ||||| |||| | || | | |
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| T |
9894890 |
ccaaccttctactaacgtccttccatttttggtcaatcaaccaacaaagatgttttgaatcaaccaaggagatattattctgcattaatttgccttcaca |
9894989 |
T |
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| Q |
268 |
aagatattgattcatgagcattgtcatctccatctccttgttatcatgcctttgtatcttcagtttctctttagcctttagaaccctttctttcatgtaa |
367 |
Q |
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|||| ||||| ||||||||| |||||| |||| | ||| |||||||||||| |||||||||||||||| ||||| |||||||||| | |||| ||| |
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| T |
9894990 |
aagacattgaaacatgagcataaccatctctttctcatagttttcatgcctttgtgtcttcagtttctctttggccttcagaaccctttgtatcatataa |
9895089 |
T |
|
| Q |
368 |
gtctcttgatcaaccgttttgttgctcttctcccccacattcattgttctgaa-ttttgagagcactgtttcgactccctgtggtgacggccatatctct |
466 |
Q |
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| T |
9895090 |
gtctcttggttcatcattttctggctcttctcccactcagacattgttctgaatttttgagagcactgtttggactccctgtggtgatggccagatcttc |
9895189 |
T |
|
| Q |
467 |
ggttgaggctcgtagggtccata |
489 |
Q |
| |
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||||||||||| || |||||||| |
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| T |
9895190 |
ggttgaggctcatatggtccata |
9895212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 3 - 136
Target Start/End: Complemental strand, 11108790 - 11108657
Alignment:
| Q |
3 |
catctccaataatattcatcatcaagcccatgaaagactgactttcaaagttgtcgccattattcatcggcattgcagcatggccaggacccatcattgc |
102 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||| ||| |||||| || |||| |||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
11108790 |
catctccattactattcatcatcaagcccatgaaagattgaatttcaatgtcgtcgtcattattcataggtattccagcatggccaggacccatcattgc |
11108691 |
T |
|
| Q |
103 |
catttcttcactactgaatgtaaatagtggtggt |
136 |
Q |
| |
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|||||||||| ||||| |||||||| |||||||| |
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| T |
11108690 |
catttcttcattactggatgtaaatggtggtggt |
11108657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 11108661 - 11108551
Alignment:
| Q |
196 |
gtggtcaatcaacgaacgaagatgttttgaatcaaccaatgacatattattatgcatcaattcactttgaaaaagatattgattcatgagcattgtcatc |
295 |
Q |
| |
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||||||| ||||| || ||||||||||||||||||||||||||||||||| ||||| |||| |||| ||||||| ||||||||||||||||||||||| |
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| T |
11108661 |
gtggtcagtcaaccaaaaaagatgttttgaatcaaccaatgacatattattctgcataaatttgctttcaaaaagacattgattcatgagcattgtcatc |
11108562 |
T |
|
| Q |
296 |
tccatctcctt |
306 |
Q |
| |
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||| ||||||| |
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| T |
11108561 |
tccttctcctt |
11108551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 13308651 - 13308588
Alignment:
| Q |
145 |
ttgaccattattatcctctgcttccaaccttctaccaacctcctccaatttgtggtcaatcaac |
208 |
Q |
| |
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|||||||||||| ||| |||||||||||||||| |||| |||| ||| || |||||||||||| |
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| T |
13308651 |
ttgaccattattgtccactgcttccaaccttcttccaatgtccttcaaattttggtcaatcaac |
13308588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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