View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1123_low_30 (Length: 271)

Name: NF1123_low_30
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1123_low_30
NF1123_low_30
[»] chr4 (5 HSPs)
chr4 (41-264)||(45177477-45177700)
chr4 (41-249)||(45182071-45182279)
chr4 (112-164)||(50645067-50645119)
chr4 (62-107)||(50645158-50645203)
chr4 (122-162)||(9399608-9399648)
[»] chr1 (2 HSPs)
chr1 (86-242)||(45238812-45238987)
chr1 (47-84)||(45242887-45242924)
[»] chr6 (2 HSPs)
chr6 (1-41)||(14860969-14861009)
chr6 (1-41)||(18677039-18677079)
[»] chr5 (1 HSPs)
chr5 (1-41)||(14405161-14405201)
[»] chr3 (2 HSPs)
chr3 (1-41)||(39925134-39925174)
chr3 (86-162)||(7101481-7101557)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 41 - 264
Target Start/End: Original strand, 45177477 - 45177700
Alignment:
Q  41 taatagaatatctgttaattaatgtaaatatcattagtctttatcattattgatgtaaatatcattactgattattaggtagcactagtcaatggttagc 140  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45177477 taatagaatatctattaattaatgtaaatatcattaatctttatcattattgatgtaaatatcattactgattattaggtagcactagtcaatggttagc 45177576  T
Q  141 cttgatgagccatgattagttactcttgtatataatgactcagtcacatcaataataatgatcgaacatatttcttatatcctatttctctgttagccta 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  45177577 cttgatgagccatgattagttactcttgtatataatgactcagtcacatcaataataaggatcgaacatatttcttatatcctatgtctctgttagccta 45177676  T
Q  241 tttcttatatggcaacagctaggg 264  Q
    |||||||||||| | |||||||||    
T  45177677 tttcttatatggtatcagctaggg 45177700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 41 - 249
Target Start/End: Original strand, 45182071 - 45182279
Alignment:
Q  41 taatagaatatctgttaattaatgtaaatatcattagtctttatcattattgatgtaaatatcattactgattattaggtagcactagtcaatggttagc 140  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45182071 taatagaatatctgttaattaatgtaaatatcattaatctttatcattattgatgtaaatatcattactgattattaggtagcactagtcaatggttagc 45182170  T
Q  141 cttgatgagccatgattagttactcttgtatataatgactcagtcacatcaataataatgatcgaacatatttcttatatcctatttctctgttagccta 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  45182171 cttgatgagccatgattagttactcttgtatataatgactcagtcacatcaataataaggatcgaacatatttcttatatcctatgtctctgttagccta 45182270  T
Q  241 tttcttata 249  Q
    |||||||||    
T  45182271 tttcttata 45182279  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 164
Target Start/End: Complemental strand, 50645119 - 50645067
Alignment:
Q  112 ttattaggtagcactagtcaatggttagccttgatgagccatgattagttact 164  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||||||||||||    
T  50645119 ttattaggtagcattagtcaatagttagccttcatgagccatgattagttact 50645067  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 107
Target Start/End: Complemental strand, 50645203 - 50645158
Alignment:
Q  62 atgtaaatatcattagtctttatcattattgatgtaaatatcatta 107  Q
    |||||||| | |||||||||||| ||||||||||||||||||||||    
T  50645203 atgtaaatgttattagtctttattattattgatgtaaatatcatta 50645158  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 9399608 - 9399648
Alignment:
Q  122 gcactagtcaatggttagccttgatgagccatgattagtta 162  Q
    |||||||||||||||||||||| ||||  ||||||||||||    
T  9399608 gcactagtcaatggttagcctttatgaatcatgattagtta 9399648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 242
Target Start/End: Complemental strand, 45238987 - 45238812
Alignment:
Q  86 attattgatgtaaatatcattactgattattaggtagcactagtcaatggttagccttgatgagccatgattagttact-------------------ct 166  Q
    ||||||||| |||||||||||| || |||||||||||||||||||||||||   |||| |||| ||||||||| |||||                   ||    
T  45238987 attattgatataaatatcattattgtttattaggtagcactagtcaatggtcgtccttcatgaaccatgattaattactctttattagcttaccaacact 45238888  T
Q  167 tgtatataatgactcagtcacatcaataataatgatcgaacatatttcttatatcctatttctctgttagcctatt 242  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| ||||||||||||||||    
T  45238887 tgtatataatgactcagtcatatcaataatgatcatcgaacatatttcttatatcctatctctctgttagcctatt 45238812  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 45242924 - 45242887
Alignment:
Q  47 aatatctgttaattaatgtaaatatcattagtctttat 84  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  45242924 aatatatgttaattaatgtaaatatcattagtctttat 45242887  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14860969 - 14861009
Alignment:
Q  1 taattatttcaatgctatattctgcattcatgatattttct 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14860969 taattatttcaatgctatattctgcattcatgatattttct 14861009  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 18677039 - 18677079
Alignment:
Q  1 taattatttcaatgctatattctgcattcatgatattttct 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  18677039 taattatttcaatgctatattctgcattcatgatattttct 18677079  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 14405201 - 14405161
Alignment:
Q  1 taattatttcaatgctatattctgcattcatgatattttct 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14405201 taattatttcaatgctatattctgcattcatgatattttct 14405161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39925134 - 39925174
Alignment:
Q  1 taattatttcaatgctatattctgcattcatgatattttct 41  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  39925134 taattatttcaatgctatattctgcattcatgatattttct 39925174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 7101557 - 7101481
Alignment:
Q  86 attattgatgtaaatatcattactgattattaggtagcactagtcaatggttagccttgatgagccatgattagtta 162  Q
    |||||| | |||||||| |||| |  ||||| ||||||||||||||||||||||||||  |||| |||| |||||||    
T  7101557 attatttacgtaaatattattagtctttatttggtagcactagtcaatggttagcctttctgagtcatggttagtta 7101481  T

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