View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1123_low_36 (Length: 253)

Name: NF1123_low_36

Description: NF1123

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1123_low_36

[»] chr4 (1 HSPs)

[»] chr1 (1 HSPs)

Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 174; E-Value: 1e-93

Query Start/End: Original strand, 36 - 234

Target Start/End: Original strand, 592956 - 593154

Alignment:

Q	36	ctcaatgacaaaagagacattaactatatccaagaataacatgatttcatggcaactttaaccacaaagaattggaaagacccaacggaaaatggtggtc	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	592956	ctcaatgacaaaagagacattaactatatccaagaataacatgatttcatggcaactttaaccacaaagaattggaaagacccaacggaaaatgggggtc	593055	T

Q	136	caaaaccagctattgtgccatttaccaaccccnnnnnnntgatttctcataatagggacagtgaaagagagttgtggctacaagaaagactgttacctt	234	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	593056	caaaaccagctattgtgccatttaccaaccccaaaaaaatgatttctcataatagggacagtgaaagagagttgtggctacaagaaagactgttacctt	593154	T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 53; E-Value: 2e-21

Query Start/End: Original strand, 36 - 121

Target Start/End: Complemental strand, 44605714 - 44605627

Alignment:

Q	36	ctcaatgacaaaagagacattaactatatccaagaataacatgatttcatggcaactttaaccac--aaagaattggaaagacccaac	121	Q
		\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	44605714	ctcaaagacaaaggagacatcaattatatccaagaataacatgattccatggcaactttaaccacataaagaattggaaagacgcaac	44605627	T

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