View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_37 (Length: 252)
Name: NF1123_low_37
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 593560 - 593332
Alignment:
| Q |
11 |
cacagacttcatcattgtcttgaataaggtgagcattcgactgcttgctaaatccaatatttgttctttataagttactcagttttgtcacactgttgtt |
110 |
Q |
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| T |
593560 |
cacagacttcatcattgtcttgaataaggtgagcattcgactgcttgcaaaatccaatatttgttctttataagttactcagttttgtcacactgttgtt |
593461 |
T |
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| Q |
111 |
gcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagtatgcgagtactaaatatgagt |
210 |
Q |
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| T |
593460 |
gcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagtatgcgagtgctaaatatgagt |
593361 |
T |
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| Q |
211 |
ttcgtaggagggttgttaaggtagtaaaa |
239 |
Q |
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| T |
593360 |
ttcgtaggagggtcgttaaggtagtaaaa |
593332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 63 - 239
Target Start/End: Original strand, 182626 - 182801
Alignment:
| Q |
63 |
tccaatatttgttctttataagttactcagttttgtcacactgttgttgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctc |
162 |
Q |
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| T |
182626 |
tccaatatttgttctttc-aggttattcagttttgtcacatggttcttgcaacattgcaggtggacaggatttgtgcctggcaaacatgtcgtaatgctc |
182724 |
T |
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| Q |
163 |
caattcgtgaagcattgatgcagcagtatgcgagtactaaatatgagtttcgtaggagggttgttaaggtagtaaaa |
239 |
Q |
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| T |
182725 |
caattcgtgaagcattgatgcaacagtatgggagtgctaaatacgagtttcgtaggagggtcattaaggtagtaaaa |
182801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 29220104 - 29220009
Alignment:
| Q |
93 |
ttttgtcacactgttgttgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcag |
188 |
Q |
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| T |
29220104 |
ttttgtcacactgttcttgcaactttgcaggtggatatgattcctcgctggaaaacatgtcctaatgctccaatttgtaaagcagtgatgcagcag |
29220009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 44605162 - 44605278
Alignment:
| Q |
73 |
gttctttataagttactcagttttgtcacactgttgttgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtga |
172 |
Q |
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| T |
44605162 |
gttctttataggttcctcaattttgtcacactgttcttgcaacattgtaggttgacaggctttatggctggaaaacatgtcgcaatgctccaattcgtaa |
44605261 |
T |
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| Q |
173 |
agcattgatgcagcagt |
189 |
Q |
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|||| ||| |||||||| |
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| T |
44605262 |
agcaatgaagcagcagt |
44605278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 44626961 - 44627049
Alignment:
| Q |
101 |
cactgttgttgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagt |
189 |
Q |
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| T |
44626961 |
cactgttcttgcaacattgcaggttgacaggctttatggctggaaaacatgtcgcaatgctccaattcgtaaagcaatgacgcagcagt |
44627049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 40672422 - 40672373
Alignment:
| Q |
140 |
ctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagt |
189 |
Q |
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| T |
40672422 |
ctggaaaacatgtcccaatgctccatttcgtaaagcattgatgcagcagt |
40672373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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