View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_47 (Length: 202)
Name: NF1123_low_47
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 25899421 - 25899478
Alignment:
| Q |
8 |
ccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
65 |
Q |
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| T |
25899421 |
ccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
25899478 |
T |
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Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 37616721 - 37616781
Alignment:
| Q |
5 |
ttgccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
65 |
Q |
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| T |
37616721 |
ttgccattctcatttcaagtttaaccttccataatcacacaatctagggaaaatagtatgc |
37616781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 5e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 29200082 - 29200018
Alignment:
| Q |
1 |
gaccttgccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
65 |
Q |
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| T |
29200082 |
gaccttgtcattctcatttcaggtttaacctttcataatcacacaatctagggaaattagtatgc |
29200018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 19768566 - 19768506
Alignment:
| Q |
5 |
ttgccattctcatttcaagtttaacctttcataatcacacaatctagggaaattagtatgc |
65 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
19768566 |
ttgccattctcatttcaagtttaaccttccataatcaaacaatctagggaaaatagtatgc |
19768506 |
T |
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