View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_5 (Length: 436)
Name: NF1123_low_5
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Complemental strand, 12160850 - 12160434
Alignment:
| Q |
15 |
tattatagcctacaatggtcaaagattgtttcaaatttgccaaaggttgtgaagaaaatcaaaaacatgataatatttaat--gtgtcaatagataaaat |
112 |
Q |
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| T |
12160850 |
tattatagcctacaatggtcaaagattgtttcaaatttgccaaaggttgtgaagaaaatcaaaaacatgataatatttaatatgtgtcaatatataaaat |
12160751 |
T |
|
| Q |
113 |
agatgagggacccaccactaaaaatgtactttgataaaaccacctatagtggcacgttatagatcgacccaccactttatgtgggacctatttaaaagtg |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
12160750 |
agatgagggacccaccactaaaaatgtacttttataaaaccacctatagtgacaggttatagatcgacccacccctttatgtgggacctatttaaaagtg |
12160651 |
T |
|
| Q |
213 |
tttgaccaacccatattagtaatttctcatcaacgcatgcttttagtttcagcagctactttcagaatctacaattgtttacctcttttcatcatggtat |
312 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
12160650 |
tttgaccaacccatattagtaatttctcatcaacacatgcttttagtttcagcagctactttcggaatctacgattgtttacctcttttcatcatggtat |
12160551 |
T |
|
| Q |
313 |
tacggtacatttatacctttattcctatctattgaatcacgctacatatattccttgttgtaggcttttccctgttctaatcacacttcctttatgtgtt |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||| |
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| T |
12160550 |
tacggtacatttatacctttattcctatctattgaatcacgctacatatattccttgttgtagatttttccatgttctaatcacgcttcctttatgtgtt |
12160451 |
T |
|
| Q |
413 |
ttctctaatattattcg |
429 |
Q |
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||||||||| ||||||| |
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| T |
12160450 |
ttctctaattttattcg |
12160434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 139 - 306
Target Start/End: Complemental strand, 12154429 - 12154262
Alignment:
| Q |
139 |
tactttgataaaaccacctatagtggcacgttatagatcgacccaccactttatgtgggacctatttaaaagtgtttgaccaacccatattagtaatttc |
238 |
Q |
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|||||| |||||||||||| || || |||||||||||| |||||||||||||||||||||||| ||||||| |||| |||||||||||||| ||||||| |
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| T |
12154429 |
tactttcataaaaccacctctaatgacacgttatagatggacccaccactttatgtgggacctgtttaaaattgttggaccaacccatattggtaatttt |
12154330 |
T |
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| Q |
239 |
tcatcaacgcatgcttttagtttcagcagctactttcagaatctacaattgtttacctcttttcatca |
306 |
Q |
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||||| |||||||||| ||||||||||| ||||| ||| ||||||| ||| ||| |||||| |||||| |
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| T |
12154329 |
tcatccacgcatgcttctagtttcagcaactactctcataatctacgattttttccctcttctcatca |
12154262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 318 - 421
Target Start/End: Complemental strand, 12153620 - 12153517
Alignment:
| Q |
318 |
tacatttatacctttattcctatctattgaatcacgctacatatattccttgttgtaggcttttccctgttctaatcacacttcctttatgtgttttctc |
417 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||||| || ||| ||||||||||||||||||| || |||||||||| ||||| |
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| T |
12153620 |
tacatttatacctttattcctttctattgaatcacgctacatctattcctttctgcaggtttttccctgttctaatcacgctacctttatgtgctttcta |
12153521 |
T |
|
| Q |
418 |
taat |
421 |
Q |
| |
|
|||| |
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|
| T |
12153520 |
taat |
12153517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 301 - 428
Target Start/End: Complemental strand, 12159953 - 12159826
Alignment:
| Q |
301 |
tcatcatggtattacggtacatttatacctttattcctatctattgaatcacgctacatatattccttgttgtaggcttttccctgttctaatcacactt |
400 |
Q |
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|||||| || || ||||||||||||||||||||||||| |||||| ||||||||||||| |||||||| || ||| |||| | |||||||| ||| || |
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| T |
12159953 |
tcatcaaggaatcacggtacatttatacctttattcctttctatttaatcacgctacatctattcctttatgcaggtttttgcatgttctaaccacgcta |
12159854 |
T |
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| Q |
401 |
cctttatgtgttttctctaatattattc |
428 |
Q |
| |
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|||||||||| |||||||||| |||||| |
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| T |
12159853 |
cctttatgtggtttctctaattttattc |
12159826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 428
Target Start/End: Complemental strand, 12153824 - 12153714
Alignment:
| Q |
316 |
ggtacatttatacctttattcctatctattgaatcacgctacatatattccttgttgtaggcttttccctgttctaatcacacttcctttatgtgttttc |
415 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||| || ||||| || || |||||||| ||||||| |||| |||||||||| ||| |
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| T |
12153824 |
ggtacatttatacctttattcctttctattgaatcacattacatctagtcctttctgcgggtttttccctattctaat--cactacctttatgtgcttta |
12153727 |
T |
|
| Q |
416 |
tctaatattattc |
428 |
Q |
| |
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|||||| |||||| |
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| T |
12153726 |
tctaattttattc |
12153714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 393
Target Start/End: Complemental strand, 12154229 - 12154158
Alignment:
| Q |
322 |
tttatacctttattcctatctattgaatcacgctacatatattccttgttgtaggcttttccctgttctaat |
393 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||||| |||||||| |||||| ||||||||||| |||| |
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| T |
12154229 |
tttatacctttactcttttctattgaatcacgctacatctattcctttctgtaggtttttccctgttttaat |
12154158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 364
Target Start/End: Complemental strand, 12159554 - 12159487
Alignment:
| Q |
297 |
cttttcatcatggtattacggtacatttatacctttattcctatctattgaatcacgctacatatatt |
364 |
Q |
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| T |
12159554 |
cttttcatcaaggaatcatggtacttttatacctttattcgtttctattgaatcacgctacatatatt |
12159487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 12159736 - 12159682
Alignment:
| Q |
314 |
acggtacatttatacctttattcctatctattgaatcacgctacatatattcctt |
368 |
Q |
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||||||||||||||||| ||||||| |||||||||| ||||||||| |||||||| |
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| T |
12159736 |
acggtacatttatacctgtattcctttctattgaattacgctacatctattcctt |
12159682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 378 - 428
Target Start/End: Complemental strand, 12153368 - 12153318
Alignment:
| Q |
378 |
ttttccctgttctaatcacacttcctttatgtgttttctctaatattattc |
428 |
Q |
| |
|
|||||| |||||||||||| || |||||||||||||| |||||| |||||| |
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|
| T |
12153368 |
ttttccatgttctaatcacgctacctttatgtgttttatctaattttattc |
12153318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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