View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_7 (Length: 430)
Name: NF1123_low_7
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 9416435 - 9416582
Alignment:
| Q |
25 |
catcagacacatagttaaaacatttgcgataatcagacacagacgatagctgacttcgatccaagagataaacacagttctcatgtaacttggaggcatc |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
9416435 |
catcagacacatagttaaaacatttgcgataatcagacacagacgatagctgacttcgatccaagagataaacatagttctcatgtaacttggaggcatc |
9416534 |
T |
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| Q |
125 |
atcatcaataaagacaacacaattccctttagtaacacacatatccaa |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9416535 |
atcatcaataaagacaacacaattccctttagtaacacacatatccaa |
9416582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 170 - 333
Target Start/End: Complemental strand, 9441663 - 9441500
Alignment:
| Q |
170 |
caattgtaactgtccgaccagtattgtcgaccaagtaaaattgtcctttaaacacacagatatctacatgcttagttgacatgtcagaaatgggtttcca |
269 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
9441663 |
caattgcaactgtccgaccagtattgtcgaccaagtaaaattgacctttaaacacacagatatctacatactttgttgacatgtcagaaatgggtttcca |
9441564 |
T |
|
| Q |
270 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattctgaaatgccgagaaccata |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
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| T |
9441563 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattccgaaatgccaagaaccata |
9441500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 170 - 333
Target Start/End: Original strand, 9407600 - 9407763
Alignment:
| Q |
170 |
caattgtaactgtccgaccagtattgtcgaccaagtaaaattgtcctttaaacacacagatatctacatgcttagttgacatgtcagaaatgggtttcca |
269 |
Q |
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| T |
9407600 |
caattgtaactgtccgaccagttttgtcgaccaagtaaaacctccttttaaacacacaaatatctacatatttagttgacatgtcggaaatgggtttcca |
9407699 |
T |
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| Q |
270 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattctgaaatgccgagaaccata |
333 |
Q |
| |
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| | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
9407700 |
aaatttgttgaggtaacagaacagcataggatgggggaaatattccgaaatgccgagaaccata |
9407763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 170 - 333
Target Start/End: Original strand, 9416807 - 9416970
Alignment:
| Q |
170 |
caattgtaactgtccgaccagtattgtcgaccaagtaaaattgtcctttaaacacacagatatctacatgcttagttgacatgtcagaaatgggtttcca |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||| |||||||||||||| ||||| |||||||| |
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| T |
9416807 |
caattgtaactgtccgaccagtattgtcgaccaaataaaacctccttttaaacacacaaatatctacatatttagttgacatgtcggaaattggtttcca |
9416906 |
T |
|
| Q |
270 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattctgaaatgccgagaaccata |
333 |
Q |
| |
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| | |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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|
| T |
9416907 |
aaatttgttgagctaacagaacagcataggatgggggaaatattccgaaatgccgagaaccata |
9416970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 170 - 333
Target Start/End: Original strand, 9425807 - 9425970
Alignment:
| Q |
170 |
caattgtaactgtccgaccagtattgtcgaccaagtaaaattgtcctttaaacacacagatatctacatgcttagttgacatgtcagaaatgggtttcca |
269 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||| |||| |||||||||||||| |||||||||||||| |
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| T |
9425807 |
caattgtaactgtccgaccagtattgtctaccaagtaaaacctccttttaaacacacaaatatcaacatatttagttgacatgtcggaaatgggtttcca |
9425906 |
T |
|
| Q |
270 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattctgaaatgccgagaaccata |
333 |
Q |
| |
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| | ||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||| |
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| T |
9425907 |
aaatttgttgaggtaacagaacagcataggatgggggaaatagtccgaaatgccaagaaccata |
9425970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 170 - 332
Target Start/End: Original strand, 9398021 - 9398183
Alignment:
| Q |
170 |
caattgtaactgtccgaccagtattgtcgaccaagtaaaattgtcctttaaacacacagatatctacatgcttagttgacatgtcagaaatgggtttcca |
269 |
Q |
| |
|
|||||| || ||||| |||||||||||| ||||||||||| || |||||||||||| |||| ||||| |||||||||||||| ||||||||||||| |
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| T |
9398021 |
caattgcaattgtcctaccagtattgtcaaccaagtaaaaccttcttttaaacacacaaatatatacatatttagttgacatgtcgaaaatgggtttcca |
9398120 |
T |
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| Q |
270 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattctgaaatgccgagaaccat |
332 |
Q |
| |
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|||| |||||||| |||| |||| |||| |||||||||||||||| ||||||||||||||||| |
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| T |
9398121 |
atagctgttgagggaacataacaacatcagatgggggaaatattccgaaatgccgagaaccat |
9398183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 9442032 - 9441888
Alignment:
| Q |
25 |
catcagacacatagttaaaacatttgcgataatcagacacagacgatagctgacttcgatccaagagataaacacagttctcatgtaacttggaggcatc |
124 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||||| ||||||||| ||| |||||||||||||||||| ||| || ||| ||| |
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| T |
9442032 |
catcaggcacatgcttaaaacatttgcgataatcagacgcagacgattgctgacttccatctaagagataaacacagttcccatatatattgaagg---t |
9441936 |
T |
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| Q |
125 |
atcatcaataaagacaacacaattccctttagtaacacacatatccaa |
172 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
9441935 |
atcatcaataaagacaacggaattccctttgacaacacacatatccaa |
9441888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 9397746 - 9397794
Alignment:
| Q |
124 |
catcatcaataaagacaacacaattccctttagtaacacacatatccaa |
172 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | |||||||| |||||| |
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|
| T |
9397746 |
catcatcaataaagacgacacaattccctttggcaacacacaaatccaa |
9397794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 170
Target Start/End: Original strand, 4439821 - 4439867
Alignment:
| Q |
124 |
catcatcaataaagacaacacaattccctttagtaacacacatatcc |
170 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
4439821 |
catcatcaataaagatgacacaattccctttagaaacacacaaatcc |
4439867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 161
Target Start/End: Original strand, 4428592 - 4428629
Alignment:
| Q |
124 |
catcatcaataaagacaacacaattccctttagtaaca |
161 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
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|
| T |
4428592 |
catcatcaataaagatgacacaattccctttagtaaca |
4428629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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