View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1123_low_9 (Length: 397)
Name: NF1123_low_9
Description: NF1123
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1123_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 96 - 368
Target Start/End: Original strand, 10350744 - 10351001
Alignment:
| Q |
96 |
atctcaccaatgaattatcaacaaaaataacgtagagagcttatcatatttatttcatccttttcacttcaaaatataatcgtaccagaaactttataat |
195 |
Q |
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| T |
10350744 |
atctcaccaatgaattatcaacaaaaataacgtagagagcttatcatatttatttcatccttttcacttcaaaatataatcgtacca------------- |
10350830 |
T |
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| Q |
196 |
catttaaaagattttgttaagcgagcaaaattgttctagtttacaatgcagggaaaatattttgattccaatggattctttctatgtttcaagaactggt |
295 |
Q |
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| T |
10350831 |
--tttaaaagattttgtcaagcgagcaaaattgttctagtttacaatgcagggaaaatattttgtttccaatggattctttctatgtctcaagaactggt |
10350928 |
T |
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| Q |
296 |
gtaaggtgcttaacaacagtaaccattacgatgtgtggcattattccattacctaaataaccaaccaacaatt |
368 |
Q |
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| T |
10350929 |
gtaaggtgcttaacaacagtaaccattacgatgtgtggcattattccattacctaaataaccaaccaacaatt |
10351001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 159 - 283
Target Start/End: Original strand, 10355255 - 10355366
Alignment:
| Q |
159 |
tcacttcaaaatataatcgtaccagaaactttataatcatttaaaagattttgttaagcgagcaaaattgttctagtttacaatgcagggaaaatatttt |
258 |
Q |
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| T |
10355255 |
tcacttcaaaaaataatcgtgccagaaactttataaccatttaaaagat-------------caaaatagttctagtttacagtgcagggaaaatatttt |
10355341 |
T |
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| Q |
259 |
gattccaatggattctttctatgtt |
283 |
Q |
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| T |
10355342 |
gattccaatggattctttctatgtt |
10355366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 10350688 - 10350745
Alignment:
| Q |
17 |
taatagggctaatcctcatgtaatttaagagaaaaattaaagaaagttttatgtcaat |
74 |
Q |
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| T |
10350688 |
taatagggctaatcctcatgtaatttaagagaaaaattaaagaaagttttgtgtcaat |
10350745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 10355190 - 10355258
Alignment:
| Q |
34 |
atgtaatttaagagaaaaattaaagaaagttttatgtcaatattgtatttcactaaatcaagatctcac |
102 |
Q |
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| T |
10355190 |
atgtagtttaagagaaaaataaaagaaaattttgtggcaatattatatttcactaaatcaagacctcac |
10355258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 10355414 - 10355462
Alignment:
| Q |
316 |
aaccattacgatgtgtggcattattccattacctaaataaccaaccaac |
364 |
Q |
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| T |
10355414 |
aaccattacgagatgtggcattattccattacctaaataaccaaccaac |
10355462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 10362001 - 10362042
Alignment:
| Q |
68 |
tgtcaatattgtatttcactaaatcaagatctcaccaatgaa |
109 |
Q |
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| T |
10362001 |
tgtcaatattgtatttcactaaatcaagacgtaaccaatgaa |
10362042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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