View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11240_high_21 (Length: 296)

Name: NF11240_high_21
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11240_high_21
NF11240_high_21
[»] chr2 (3 HSPs)
chr2 (71-284)||(35411657-35411876)
chr2 (231-293)||(16625730-16625792)
chr2 (232-293)||(16519016-16519077)
[»] chr8 (3 HSPs)
chr8 (231-293)||(39194024-39194086)
chr8 (231-290)||(1840133-1840192)
chr8 (231-293)||(31149995-31150057)
[»] chr7 (4 HSPs)
chr7 (231-293)||(42112885-42112947)
chr7 (72-112)||(48992218-48992258)
chr7 (233-294)||(13697372-13697433)
chr7 (233-293)||(42622444-42622504)
[»] chr5 (1 HSPs)
chr5 (231-293)||(6044626-6044688)
[»] chr3 (2 HSPs)
chr3 (231-293)||(18257634-18257696)
chr3 (235-293)||(29623329-29623387)
[»] chr6 (1 HSPs)
chr6 (233-293)||(26713946-26714006)
[»] chr1 (3 HSPs)
chr1 (231-291)||(5970367-5970427)
chr1 (235-291)||(28718743-28718799)
chr1 (231-291)||(38857939-38857999)
[»] chr4 (4 HSPs)
chr4 (234-293)||(8827749-8827808)
chr4 (248-291)||(16006272-16006315)
chr4 (231-290)||(35959277-35959336)
chr4 (231-293)||(16535784-16535846)
[»] scaffold0927 (1 HSPs)
scaffold0927 (231-293)||(2836-2898)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 71 - 284
Target Start/End: Original strand, 35411657 - 35411876
Alignment:
Q  71 caccccaagtaacgaaaacgacggtgtagtaagtgaggataa---tagctgcaaacaaggctttgtttgggagtttggagcaagaaaaatggagagcttt 167  Q
    |||||||||||| |||||| ||||||||||||||||||||||   ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  35411657 caccccaagtaaggaaaacaacggtgtagtaagtgaggataagaatagctgcgaaccaggctttgtttgggagtttggagcaaggaaaatggagagcttt 35411756  T
Q  168 gggggtgagaaatatagaggaaaatg-nnnnnnnctttcacatatttttgaaggta--nnnnnnnnagagaatgaaaaaccaatgcttataattcatatg 264  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||          |||||||||||||| |||||||||||||||||||    
T  35411757 gggggtgagaaatatagaggaaaatgaaaaaaaactttcacatatttttgaaggtattttttttttagagaatgaaaaactaatgcttataattcatatg 35411856  T
Q  265 ttttaactattaagaatatt 284  Q
    |||| |||||||||||||||    
T  35411857 tttttactattaagaatatt 35411876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 16625730 - 16625792
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    ||||||||| |||||||||||||| |||||||| |||| | ||||||||||||||||||||||    
T  16625730 agagaatgataaaccaatgcttatgattcatatatttttaatattaagaatattataacaaca 16625792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 293
Target Start/End: Original strand, 16519016 - 16519077
Alignment:
Q  232 gagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    |||||| | |||| ||||||||| |||||||| |||| | ||||||||||||||||||||||    
T  16519016 gagaatcataaactaatgcttatgattcatatatttttaatattaagaatattataacaaca 16519077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 39194086 - 39194024
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    ||||||||| |||| |||| |||| |||||||| |||| | ||||||||||||||||||||||    
T  39194086 agagaatgataaactaatgtttatgattcatatatttttaatattaagaatattataacaaca 39194024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 290
Target Start/End: Original strand, 1840133 - 1840192
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataaca 290  Q
    ||||||||| |||||||||||||| |||||||| | || | ||||||||||| |||||||    
T  1840133 agagaatgataaaccaatgcttatgattcatatatatttaatattaagaatactataaca 1840192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 31150057 - 31149995
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    ||||||||| ||||  ||| |||| |||||||| |||| | ||||||||||||||||||||||    
T  31150057 agagaatgataaactgatgtttatgattcatatatttttaatattaagaatattataacaaca 31149995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 42112885 - 42112947
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    ||||||||| |||| ||||||||| |||||||| |||| | ||||||||||||| ||||||||    
T  42112885 agagaatgataaactaatgcttatgattcatatatttttaatattaagaatattttaacaaca 42112947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 48992258 - 48992218
Alignment:
Q  72 accccaagtaacgaaaacgacggtgtagtaagtgaggataa 112  Q
    ||||||||||||||||||||||| ||||||||| |||||||    
T  48992258 accccaagtaacgaaaacgacggcgtagtaagttaggataa 48992218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 294
Target Start/End: Complemental strand, 13697433 - 13697372
Alignment:
Q  233 agaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaacac 294  Q
    ||||||| ||| ||| |||||| |||||||| |||| | ||| |||||||||||||||||||    
T  13697433 agaatgataaatcaacgcttatgattcatatttttttaatataaagaatattataacaacac 13697372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 42622504 - 42622444
Alignment:
Q  233 agaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    ||||||| |||| ||||||||| |||||| | |||| | ||||| ||||||||||||||||    
T  42622504 agaatgataaactaatgcttatgattcatgtatttttaatattacgaatattataacaaca 42622444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 6044688 - 6044626
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    ||||||||| |||| ||| ||||| |||||||| |||| | ||||||||||||||||||||||    
T  6044688 agagaatgataaactaatacttatcattcatatatttttaatattaagaatattataacaaca 6044626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 18257634 - 18257696
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    ||||||||| |||| |||| |||| |||||||| |||| | ||||||||||||||||||||||    
T  18257634 agagaatgataaactaatgtttatgattcatatatttttaatattaagaatattataacaaca 18257696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 29623387 - 29623329
Alignment:
Q  235 aatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    ||||| |||| ||||||||| |||||||| |||| | |||||| |||||||||||||||    
T  29623387 aatgataaactaatgcttatgattcatatatttttaatattaaaaatattataacaaca 29623329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 293
Target Start/End: Complemental strand, 26714006 - 26713946
Alignment:
Q  233 agaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    ||||||| |||| ||||||||| |||||||| |||| | ||||||||||| ||||||||||    
T  26714006 agaatgataaactaatgcttatgattcatatatttttaatattaagaataatataacaaca 26713946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 5970367 - 5970427
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaa 291  Q
    ||||||||| |||| |||| |||| ||| ||||||||| | ||||||||||||||||||||    
T  5970367 agagaatgataaactaatgtttatgattgatatgtttttaatattaagaatattataacaa 5970427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 28718743 - 28718799
Alignment:
Q  235 aatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaa 291  Q
    ||||| |||| ||||||||| |||||||| |||| | |||||||||||||| |||||    
T  28718743 aatgataaactaatgcttatgattcatatattttcaatattaagaatattacaacaa 28718799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 38857939 - 38857999
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaa 291  Q
    ||||||||| |||| |||| | || |||||||| |||| | ||||||||||||||||||||    
T  38857939 agagaatgataaactaatgataatgattcatatatttttaatattaagaatattataacaa 38857999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 8827749 - 8827808
Alignment:
Q  234 gaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    |||||| |||| |||| |||| |||||||| |||| | ||||||||||||||||||||||    
T  8827749 gaatgataaactaatgtttatgattcatatatttttaatattaagaatattataacaaca 8827808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 16006272 - 16006315
Alignment:
Q  248 tgcttataattcatatgttttaactattaagaatattataacaa 291  Q
    |||||||||||||||| |||| | ||||||||||||||||||||    
T  16006272 tgcttataattcatatatttttaatattaagaatattataacaa 16006315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 231 - 290
Target Start/End: Complemental strand, 35959336 - 35959277
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataaca 290  Q
    ||||||||| |||  ||||||||| |||||||| |||| | |||||||||||||||||||    
T  35959336 agagaatgataaagtaatgcttatgattcatatatttttaatattaagaatattataaca 35959277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 16535846 - 16535784
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    ||||||||| |||| ||| ||||||||| |||| |||| | | ||||||||||||||||||||    
T  16535846 agagaatgataaactaatacttataattaatatctttttaattttaagaatattataacaaca 16535784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0927 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0927
Description:

Target: scaffold0927; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 2836 - 2898
Alignment:
Q  231 agagaatgaaaaaccaatgcttataattcatatgttttaactattaagaatattataacaaca 293  Q
    ||||||||| |||| ||| ||||| |||||||| |||| | ||||||||||||| ||||||||    
T  2836 agagaatgataaactaatacttatgattcatatatttttaatattaagaatattgtaacaaca 2898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University