View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11240_high_22 (Length: 277)
Name: NF11240_high_22
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_high_22 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 45785201 - 45784952
Alignment:
| Q |
11 |
cacagagacttgagtcagttccacctaggattcacatgggtactattgaaggggtaacttctgaaggttattcaaaagataacgagctttggaagaaaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45785201 |
cacagagacttgagtcagttccacctaggattcacatgggtactattgaaggggtaacttctgaaggttattcaaaagataacgagctttggaagaaaag |
45785102 |
T |
|
| Q |
111 |
gattccacattacaaaaaagtgaacaatcagcttggaaccaagagatatcgtaaccttctggatatgaatgctaacttgggtggatttgcatctgcttta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45785101 |
gattccacattacaaaaaagtgaacaatcagcttggaaccaagagatatcgtaaccttgtggatatgaatgctaacttgggtggatttgcatctgcttta |
45785002 |
T |
|
| Q |
211 |
gttaaaaatcctgtttgggttatgaatgtggttcctgtccaggctaaggt |
260 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45785001 |
gttaagaatcctgtttgggttatgaatgtggttcctgtccaggctaaggt |
45784952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 260
Target Start/End: Original strand, 101595 - 101685
Alignment:
| Q |
170 |
tggatatgaatgctaacttgggtggatttgcatctgctttagttaaaaatcctgtttgggttatgaatgtggttcctgtccaggctaaggt |
260 |
Q |
| |
|
||||||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||| ||| |||||| |
|
|
| T |
101595 |
tggatatgaatgctagctatggtggatttgcatctgctttgattaagaatcctgtttgggttatgaacgtggttcttgtcgaggttaaggt |
101685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 6481846 - 6481906
Alignment:
| Q |
11 |
cacagagacttgagtcagttccacctaggattcacatgggtactattgaaggggtaacttc |
71 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
6481846 |
cacagagacttcagtcagttccacctaggattaacatgggtaccattgaagttgtaacttc |
6481906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 503700 - 503625
Alignment:
| Q |
170 |
tggatatgaatgctaacttgggtggatttgcatctgctttagttaaaaatcctgtttgggttatgaatgtggttcc |
245 |
Q |
| |
|
|||||||||||||| ||| |||||||||||| |||| || || ||| |||| ||||||||||||||||| ||||| |
|
|
| T |
503700 |
tggatatgaatgctggctttggtggatttgcagctgcattggtgaaatatccagtttgggttatgaatgttgttcc |
503625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 260
Target Start/End: Complemental strand, 10281577 - 10281486
Alignment:
| Q |
173 |
atatgaatgctaacttgggtggatttgcatctgctttagttaaaaatcctgtttgggt----tatgaatgtggttcctgtccaggctaaggt |
260 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| |||| || | ||||||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
10281577 |
atatgaatgctaactacggtggatttgcatttgctttgattaagaaccatgtttgggttatatatgaacgtggttcctgtccatgctaaggt |
10281486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 64361 - 64290
Alignment:
| Q |
175 |
atgaatgctaacttgggtggatttgcatctgctttagttaaaaatcctgtttgggttatgaatgtggttcct |
246 |
Q |
| |
|
||||||||| | ||||||||||||||| || | | |||||| ||||| |||||||||||||||| |||||| |
|
|
| T |
64361 |
atgaatgcttatttgggtggatttgcagcttcacttgttaaatatcctatttgggttatgaatgttgttcct |
64290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University