View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11240_high_3 (Length: 697)

Name: NF11240_high_3
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11240_high_3
NF11240_high_3
[»] chr4 (1 HSPs)
chr4 (19-690)||(43217103-43217744)


Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 19 - 690
Target Start/End: Complemental strand, 43217744 - 43217103
Alignment:
Q  19 gcttctaaatccttgttgacgaacgatgagaggttggtgtggtctaatccaatctagtgtttgtcctatttgtaacgggtcttcaaggactctttttcat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  43217744 gcttctaaatccttgttgacgaacgatgagaggttggtgtggtctaatccaacctagtgtttgtcctatttgtaacgggtcttcaaggactctttttcat 43217645  T
Q  119 gatatccattattgtcctctcgccacttctctatggcataaagtatatgctatatgccaaccctatgccaacccctgggagtagtttcttcatgcatata 218  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||    
T  43217644 gctatccattattgtcctctcgccacttctctatggcataaagtatatgctatatgccaaccc-----------ctgggagtagtttcttcatgcatata 43217556  T
Q  219 gatattcatagtttgcatagaccgtactctaatctttggaatcaccttggaagttctttggcataggaggaatgtatttatc------caaacccctata 312  Q
    ||                   |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||    
T  43217555 ga-------------------ccgtactcta-tctttggaatcaccttggaagttctttggcataggaggaatgtatttatctttgaccaaacccctata 43217476  T
Q  313 tattttgttgaagaatactattgaaaggattaacgagcttgttgattctacataacacaaggtctttagttctctcttcaagagactatatccatgcagt 412  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43217475 tattttgttgaagaatactattgagaggattaacgagcttgttgattctacataacacaaggtctttagttctctcttcaagagactataaccatgcagt 43217376  T
Q  413 tacatgtcccaagtgatattcgttggtgtccaccctctgcttagtggctaaaactcaatattgatggtgttgttcatcatctatatggcaaagcttcttg 512  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43217375 tacatgtcccaagtgatattcgttggtgtccaccctctgcttagtggctaaaactcaatattgatggtgttgttcatcatctatatggcaaagcttcttg 43217276  T
Q  513 tggaggtttgcttagggatcgtaccgatgctttcatcagaagtttcagtgaaaatctcggttgttgtaccacttttgcttcacagctctaggaatctata 612  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||    
T  43217275 tggaggtttgcttagggatcgtaccgat-ctttcatcagaagtttcagtgaaaatctcggttgttgtaccacttttgcttcacagctctagg----gata 43217181  T
Q  613 tgtgaatgaagcttgcgcatcagaggggttttgatagtataaatggtgaaagtgactctcttaccgttattcatctca 690  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43217180 tgtgaatgaagcttgcgcatcagaggggttttgatagtataaatggtgaaagtgactctcttaccgttattcatctca 43217103  T

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