View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_high_31 (Length: 240)
Name: NF11240_high_31
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 16215787 - 16215564
Alignment:
| Q |
1 |
tcatatttttcatttcatattagattacaaaaaatattattagtcctttgtttatactattaannnnnnnnncttctttgtgaaattagggagtaatgtt |
100 |
Q |
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| T |
16215787 |
tcatatttttcatttcatattagattacaaaaaatattattagtcctttgtttatactattaatttttttttcttctttgtgaaattagggagtaatgtt |
16215688 |
T |
|
| Q |
101 |
cctcagctaatgaggctaactacacttggat----taccactatacaacattttctcaatagaagaaattggagatgcaaccaacaactttgatccatca |
196 |
Q |
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| T |
16215687 |
cctcagctaatgaggctaactacacttggatggattaccaccatacaacattttctcaatagaagaaattggagatgcaaccaacaactttgatccatca |
16215588 |
T |
|
| Q |
197 |
aatctaataggagaaggatcacaa |
220 |
Q |
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|||||||||||||||||||||||| |
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| T |
16215587 |
aatctaataggagaaggatcacaa |
16215564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 74 - 223
Target Start/End: Complemental strand, 16962968 - 16962819
Alignment:
| Q |
74 |
ttctttgtgaaattagggagtaatgttcctcagctaatgaggctaactacacttggattaccactatacaacattttctcaatagaagaaattggagatg |
173 |
Q |
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| T |
16962968 |
ttctttgtgaaattagggagtaatgttccccagctaatgaggctaactacacttggattaccaccatacaacattttcacaatagaagaaattggagatg |
16962869 |
T |
|
| Q |
174 |
caaccaacaactttgatccatcaaatctaataggagaaggatcacaagga |
223 |
Q |
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| T |
16962868 |
caaccaacaactttgatccatcaaatctaataggagaaggatcacaagga |
16962819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 90 - 219
Target Start/End: Complemental strand, 48891942 - 48891813
Alignment:
| Q |
90 |
ggagtaatgttcctcagctaatgaggctaactacacttggattaccactatacaacattttctcaatagaagaaattggagatgcaaccaacaactttga |
189 |
Q |
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|||||| |||||||| ||||||||||||| || ||||||||||||||| |||| ||||||| ||||||||||||| | ||||||||||||||||||| | |
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| T |
48891942 |
ggagtattgttcctcggctaatgaggctagctgcacttggattaccaccttacagcattttcacaatagaagaaatcgaagatgcaaccaacaactttca |
48891843 |
T |
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| Q |
190 |
tccatcaaatctaataggagaaggatcaca |
219 |
Q |
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| T |
48891842 |
tccatcaaacctaataggagaagggtcaca |
48891813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 223
Target Start/End: Original strand, 24826699 - 24826826
Alignment:
| Q |
96 |
atgttcctcagctaatgaggctaactacacttggattaccactatacaacattttctcaatagaagaaattggagatgcaaccaacaactttgatccatc |
195 |
Q |
| |
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|||||||||| |||||| ||| |||||| |||| |||| |||||| |||||| || ||||||||||| |||||||||||| |||||||| | ||| |
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| T |
24826699 |
atgttcctcaaacaatgagactagctacacatggacagccaccatacaatattttcacagaagaagaaattgaagatgcaaccaataactttgaccaatc |
24826798 |
T |
|
| Q |
196 |
aaatctaataggagaaggatcacaagga |
223 |
Q |
| |
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|||| ||||||||||||||||||||||| |
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|
| T |
24826799 |
aaatttaataggagaaggatcacaagga |
24826826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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