View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11240_high_32 (Length: 232)

Name: NF11240_high_32
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11240_high_32
NF11240_high_32
[»] chr1 (1 HSPs)
chr1 (13-213)||(35904524-35904724)
[»] chr7 (2 HSPs)
chr7 (13-210)||(47624519-47624716)
chr7 (13-177)||(27539429-27539593)
[»] chr4 (7 HSPs)
chr4 (13-68)||(39543049-39543104)
chr4 (13-68)||(39574884-39574939)
chr4 (13-68)||(39509984-39510039)
chr4 (13-68)||(39579417-39579472)
chr4 (90-134)||(21601648-21601692)
chr4 (13-177)||(46271667-46271831)
chr4 (13-69)||(50421836-50421892)
[»] chr8 (1 HSPs)
chr8 (17-69)||(13973814-13973866)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 35904724 - 35904524
Alignment:
Q  13 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35904724 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca 35904625  T
Q  113 aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtccaaatatgaaccagggtcatgttagtacagtggtaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35904624 aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtccaaatatgaaccagggtcatgttagtacagtggtaa 35904525  T
Q  213 a 213  Q
    |    
T  35904524 a 35904524  T

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Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 13 - 210
Target Start/End: Original strand, 47624519 - 47624716
Alignment:
Q  13 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca 112  Q
    ||||||||| || ||||| ||||| || ||||||||||| ||||| ||||||||||| || || |||||||| || |||||||||||||| |||||||||    
T  47624519 gaagcaaagattagagatctgcatcggagctgcaagagggcttcactaccttcacacgggggccaagtacaccatcattcatagagatgtcaaaacaaca 47624618  T
Q  113 aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtccaaatatgaaccagggtcatgttagtacagtggt 210  Q
    || |||||  | || ||||| |    ||| ||||| ||||||||||| ||||| ||||| |||||| || |||||   || ||||||||||| |||||    
T  47624619 aatattctcttggacgaaaactggaatgccaaggtatcagattttgggttgtcaaaaactggtccagatttgaacgctggccatgttagtactgtggt 47624716  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 27539429 - 27539593
Alignment:
Q  13 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca 112  Q
    |||||||||| | ||||| |||||||| |||||  ||||||| || || |||||||| ||||| || || || || || ||  | |||||||| || |||    
T  27539429 gaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcacaccggtgctaaatataccatcatccaccgtgatgtgaagactaca 27539528  T
Q  113 aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtcc 177  Q
    |||||| | |||||||| || |  || || |||||||| |||||||||||||| ||||| |||||    
T  27539529 aacattttactagatgagaagtgggtggccaaggtttctgattttggattgtctaaaacaggtcc 27539593  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 39543104 - 39543049
Alignment:
Q  13 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca 68  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  39543104 gaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcaca 39543049  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 39574939 - 39574884
Alignment:
Q  13 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca 68  Q
    |||||||||| | |||||||||||||||||||| ||||||||||||||||||||||    
T  39574939 gaagcaaaggcttgagatttgcattggtgctgctagaggtcttcattaccttcaca 39574884  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 39510039 - 39509984
Alignment:
Q  13 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca 68  Q
    |||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||    
T  39510039 gaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca 39509984  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 39579472 - 39579417
Alignment:
Q  13 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcaca 68  Q
    |||||||||| | |||||||| ||||||||||| ||||||||||||||||||||||    
T  39579472 gaagcaaaggcttgagatttgtattggtgctgctagaggtcttcattaccttcaca 39579417  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 21601648 - 21601692
Alignment:
Q  90 ttcatagagatgtgaaaacaacaaacattcttctagatgaaaatt 134  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||    
T  21601648 ttcatagagatgtgaaatcaaccaacattcttctagatgaaaatt 21601692  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 46271667 - 46271831
Alignment:
Q  13 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacacaggtgcaaagtacactataattcatagagatgtgaaaacaaca 112  Q
    |||||||||| | ||||| |||||||| |||||  ||||||| || || |||||||| ||||| || || || || || ||  | |||||||| || |||    
T  46271667 gaagcaaaggcttgagatatgcattggagctgctcgaggtctacactatcttcacaccggtgctaaatataccatcatccaccgtgatgtgaagactaca 46271766  T
Q  113 aacattcttctagatgaaaattttgttgcaaaggtttcagattttggattgtcgaaaaccggtcc 177  Q
    |||||| | |||||||| || |  || || |||||||| |||||||||||||| ||||| |||||    
T  46271767 aacattttactagatgagaagtgggtggccaaggtttctgattttggattgtctaaaacaggtcc 46271831  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 50421892 - 50421836
Alignment:
Q  13 gaagcaaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacac 69  Q
    ||||||||||||||| ||||||||||||||||||||  | ||| |||||||||||||    
T  50421892 gaagcaaaggttggaaatttgcattggtgctgcaaggagacttgattaccttcacac 50421836  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 13973866 - 13973814
Alignment:
Q  17 caaaggttggagatttgcattggtgctgcaagaggtcttcattaccttcacac 69  Q
    ||||||||||| |||||||||||  | ||||||||||||||||||||||||||    
T  13973866 caaaggttggacatttgcattggatcggcaagaggtcttcattaccttcacac 13973814  T

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