View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_high_4 (Length: 627)
Name: NF11240_high_4
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 559; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 608
Target Start/End: Complemental strand, 6138971 - 6138364
Alignment:
| Q |
1 |
ttgctgcacctgttgctgtagagggatatagaaatgatgcataggcggatctagaagcaggagaaggatcgtgtcttcctatattgaagtttgtcctagg |
100 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
6138971 |
ttgctccacctgttgttgtagagggatatagaaatgatgcataggcggatctagaagcaggagaaggatcgtgtcttcctatgttgaagtttgtcctagg |
6138872 |
T |
|
| Q |
101 |
atgctcttgacgacgtaacatgctaggaatatcgagaggctcagtgagaaaatcagaatgaggtgcattatgatatggaattggacgatcatcttcaaaa |
200 |
Q |
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| T |
6138871 |
atgctcttgacgacataacatgctaggaatatcgagaggctcagtgagaaaatcagaatgaggtgcattatgatatggaattggacgatcatcttcaaaa |
6138772 |
T |
|
| Q |
201 |
agacctattgtaccacgaggaggactataaagtggagaccaagtagcagaagtagtaccataagtacttggtccttcacgtgcaagagcagcgtcgttca |
300 |
Q |
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| T |
6138771 |
agacctattgtaccacgaggaggactataaagtggagaccaagtagcagaagtagtaccataagtacttggtcctgcacgtgcaagagcagcgtcgttca |
6138672 |
T |
|
| Q |
301 |
tcgtgttgtcaaagtccctccaagatgttgatgaagatgatgacgacatgttgacgttgtcttgatgagtatgnnnnnnngaaggaagagtgcgtcttct |
400 |
Q |
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| T |
6138671 |
tcgtgttgtcaaagtccctccaagatgttgatgaagatgatgacgacatgttgacgttgtcttgatgagtatgaaaaaaagaaggaagagtgcgtcttct |
6138572 |
T |
|
| Q |
401 |
actagaaccttcatcaccctgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctttaacaataaattagcacgacgt |
500 |
Q |
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| T |
6138571 |
actagaaccttcatcaccctgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctttaacaataaattagcacgacgt |
6138472 |
T |
|
| Q |
501 |
gggtcatcatcgttgctaggaccaccagtggtggtggtgttgttgttaattcctccatagaatgatgaaatggaattagcattactactatttcctgcag |
600 |
Q |
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| T |
6138471 |
tgatcatcatcgttgctaggaccaccagtggtggtggtgttgttgttaattcctccatagaatgatgaaatggaattagcattactactatttcctgcag |
6138372 |
T |
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| Q |
601 |
gaggtcca |
608 |
Q |
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|||||||| |
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| T |
6138371 |
gaggtcca |
6138364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 338 - 497
Target Start/End: Complemental strand, 6145686 - 6145527
Alignment:
| Q |
338 |
tgatgacgacatgttgacgttgtcttgatgagtatgnnnnnnngaaggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaa |
437 |
Q |
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| T |
6145686 |
tgatgaagacatgttgacattgtcttgatgaagatgaaaaggaggaggaaaagtgtgtcttctgcttgagctttcgtcaacttgtgaaccttgattagaa |
6145587 |
T |
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| Q |
438 |
gtttcacctctatttaatgcatttggtgatctgcttctctttaacaataaattagcacga |
497 |
Q |
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| T |
6145586 |
gtttcacctctagtgaatggatcaggtgatctcctcctcttgaacaatgaattagcacga |
6145527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 420 - 497
Target Start/End: Complemental strand, 6126185 - 6126108
Alignment:
| Q |
420 |
tgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctttaacaataaattagcacga |
497 |
Q |
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| T |
6126185 |
tgtgaaccttgattagaagtttcacctctaatgaatggatcgggtgatctatttctctttaacaatgaattagcacga |
6126108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 478
Target Start/End: Original strand, 33802873 - 33802968
Alignment:
| Q |
383 |
aggaagagtgcgtcttctactagaaccttcatcaccctgtgaaccttgagcagaagtttcacctctatttaatgcatttggtgatctgcttctctt |
478 |
Q |
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|||||||||||||||||| ||| | | ||||||| |||||||||||| |||||||||||||||| | |||| || || ||||| |||||||| |
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| T |
33802873 |
aggaagagtgcgtcttctgctaaacctttcatcaatttgtgaaccttgattagaagtttcacctctagtgaatggatcaggcgatctacttctctt |
33802968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Original strand, 33803038 - 33803074
Alignment:
| Q |
560 |
gaatgatgaaatggaattagcattactactatttcct |
596 |
Q |
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| T |
33803038 |
gaatgacgaaacggaattagcattactactatttcct |
33803074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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