View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11240_low_10 (Length: 410)
Name: NF11240_low_10
Description: NF11240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11240_low_10 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 18 - 410
Target Start/End: Complemental strand, 31768899 - 31768517
Alignment:
| Q |
18 |
aaataatgaaagttggtaaattttgattctatataaatcatacctctatagctagatgctcacaaaaacaagatcttagctgaaatcaaagtctaataca |
117 |
Q |
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| T |
31768899 |
aaataatgaaagttggtaaattttgattctatataaatcatccctctatagctagatactcacaaaaaca---tcttagctcaaatcaaagtctaataca |
31768803 |
T |
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| Q |
118 |
agcatatagcaaatggattctcgtatccaatactatcttgtgatttttatggtcacttttgcaacaactttgagtcctaccattgcaaaactgactccaa |
217 |
Q |
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| T |
31768802 |
agcatatagcaaatggattctcgtttccaattc------gtgctttttgtggtcacttttgcaacaattttgagtcctaccattgcaaagctgactccaa |
31768709 |
T |
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| Q |
218 |
attattatgacagaatttgtcccaaggcattgccaatcataaaatcaatttgttcagcaagcatttattcgtgagccacgcatgggagcatcgttgctac |
317 |
Q |
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| T |
31768708 |
attattatgacagaatttgtcctaaggcattgccagtcataaagtcaatt-gttaagcaagcaattattcgtgagccacgcatgggagcatcattgctac |
31768610 |
T |
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| Q |
318 |
gcttgcatttccatgactgctttgtaaatgtaagttagtttattacatttataaaattatgtttagctttattatagtcacaatacagttaat |
410 |
Q |
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| T |
31768609 |
gtttgcatttccatgactgctttgttaatgtaagttagttgattacatttataaaattatgtttagctttattatagtcacaatacagttaat |
31768517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 12 - 353
Target Start/End: Complemental strand, 31762580 - 31762242
Alignment:
| Q |
12 |
tcatcaaaataatgaaagttggtaaattttgattctatataaatcatacctctatagctagatgctcacaaaaacaagatcttagctgaaatcaaagtct |
111 |
Q |
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| T |
31762580 |
tcatcaaaa-aataaaagttgctacatttccattctatataaatcatccctctatagctagatactcacaaaaacaaaatctttgctcaaattatagtct |
31762482 |
T |
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| Q |
112 |
aata----caagcatatagcaaa-tggattctcgtatccaatactatcttgtgatttttatggtcacttttgcaacaactttgagtcctaccattgcaaa |
206 |
Q |
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||| |||||||| || ||| |||||||||||||||||| | ||| | ||| |||||||||||||||||| |||||| |||||||||||||| |
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| T |
31762481 |
catatacacaagcatagagtaaaatggattctcgtatccaattc------gtgctatttgtggtcacttttgcaacaattttgagccctaccattgcaaa |
31762388 |
T |
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| Q |
207 |
actgactccaaattattatgacagaatttgtcccaaggcattgccaatcataaaatcaatttgttcagcaagcatttattcgtgagccacgcatgggagc |
306 |
Q |
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| T |
31762387 |
actgactccaaattattatgacagaatttgtcccaaggcattgccaatcataaattcaa-ttgttaagcaagcaattattcgtgagccacgcatgggagc |
31762289 |
T |
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| Q |
307 |
atcgttgctacgcttgcatttccatgactgctttgtaaatgtaagtt |
353 |
Q |
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| T |
31762288 |
atcattgctacgtttgcatttccatgactgctttgttaacgtaagtt |
31762242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 17 - 342
Target Start/End: Complemental strand, 31754894 - 31754573
Alignment:
| Q |
17 |
aaaataatgaaagttggtaaattttgattctatata--aatcatacctctatagctagatgctcacaaaaacaagatcttagctgaaatcaaagtctaat |
114 |
Q |
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| T |
31754894 |
aaaaaaataaaagttgatcaattttgattctatatataaaccacccctctatagctagatactcacaaaaacaaaatcttagctcaaatcaaagtctcat |
31754795 |
T |
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| Q |
115 |
acaagcatatagcaaa-tggattctcgtatccaatactatcttgtgatttttatggtcacttttgcaacaactttgagtcctaccattgcaaaactgact |
213 |
Q |
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| T |
31754794 |
acaagcatatagtaaaatgaattctcgtatccaaa------ttgtgttttttgtggtcacttttgcaacaattttgagtcctaccattgcaaaactgtct |
31754701 |
T |
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| Q |
214 |
ccaaattattatgacagaatttgtcccaaggcattgccaatcataaaatcaatttgttcagcaagcatttattcgtgagccacgcatgggagcatcgttg |
313 |
Q |
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| T |
31754700 |
tctaattattatgacgaaatttgcccacaggcattgccaatcataaagtcggtt-gttaagcaagcaattattcgtgagccacgcatgggagcatcgttg |
31754602 |
T |
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| Q |
314 |
ctacgcttgcatttccatgactgctttgt |
342 |
Q |
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| T |
31754601 |
ctacgtttgcatttccatgactgctttgt |
31754573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 31799353 - 31799294
Alignment:
| Q |
295 |
acgcatgggagcatcgttgctacgcttgcatttccatgactgctttgtaaatgtaagtta |
354 |
Q |
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| T |
31799353 |
acgcattggagcatctcttctacgcttgcattttcatgactgcttcgttaatgtaagtta |
31799294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 348
Target Start/End: Complemental strand, 32451093 - 32451065
Alignment:
| Q |
320 |
ttgcatttccatgactgctttgtaaatgt |
348 |
Q |
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| T |
32451093 |
ttgcatttccatgactgctttgtaaatgt |
32451065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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